2026 Anne E. Carpenter: Biology and Biochemistry Researcher – H-Index, Publications & Awards

D-Index & Metrics

Discipline name	D-Index	World Ranking	Current World Ranking	National Ranking	Current National Ranking	Publications	Citations
Biology and Biochemistry	80	3985	3672	1964	1770	247	39127

Discipline name

D-Index

World Ranking

Current World Ranking

National Ranking

Current National Ranking

Publications

Citations

Biology and Biochemistry

3985

3672

1964

1770

247

39127

Biology and Biochemistry

D-Index

Citations

39127

World Ranking

3985

National Ranking

1964

Research.com Recognitions

2020 - Fellow of the Indian National Academy of Engineering (INAE)

Overview

Anne E. Carpenter is affiliated with the Broad Institute in the United States. Their research primarily spans the domain of Biochemistry, Genetics and Molecular Biology, with a significant focus on Biophysics and Molecular Biology as core subfields. Other areas of investigation include Media Technology, Computational Theory and Mathematics, and Biomedical Engineering.

The scientist's publication record features work on a variety of topics related to cell imaging and computational methods within biomedical research. Prominent themes within their research include:

Cell Image Analysis Techniques
Single-cell and spatial transcriptomics
Image Processing Techniques and Applications
Advanced Fluorescence Microscopy Techniques
Computational Drug Discovery Methods
Genetics, Bioinformatics, and Biomedical Research
3D Printing in Biomedical Research

Anne E. Carpenter has contributed to numerous peer-reviewed papers. Selected recent publications include:

"CellProfiler 4: improvements in speed, utility and usability" (2021), published in BMC Bioinformatics
"Image-based profiling for drug discovery: due for a machine-learning upgrade?" (2020), published in Nature Reviews Drug Discovery
"nucleAIzer: A Parameter-free Deep Learning Framework for Nucleus Segmentation Using Image Style Transfer" (2020), published in Cell Systems
"Imaging flow cytometry" (2022), published in Nature Reviews Methods Primers
"Predicting cell health phenotypes using image-based morphology profiling" (2021), published in Molecular Biology of the Cell

The scientist frequently publishes in venues such as:

bioRxiv (Cold Spring Harbor Laboratory)
Nature Methods
Zenodo (CERN European Organization for Nuclear Research)
Molecular Biology of the Cell
Nature Communications

Anne E. Carpenter collaborates regularly with several co-authors, including Shantanu Singh, Beth A. Cimini, Gregory P. Way, Maria Kost-Alimova, and Erin Weisbart. These collaborations have contributed to advancing research in their fields of study.

In recognition of their contributions, the scientist has received honors such as the Fellowship of the Indian National Academy of Engineering (INAE) awarded in 2020.

Best Publications

CellProfiler: image analysis software for identifying and quantifying cell phenotypes

Anne E Carpenter;Thouis R Jones;Michael R Lamprecht;Colin Clarke

6101
Citations
Opportunities and obstacles for deep learning in biology and medicine.

Travers Ching;Daniel S. Himmelstein;Brett K. Beaulieu-Jones;Alexandr A. Kalinin

2372
Citations
A Lentiviral RNAi Library for Human and Mouse Genes Applied to an Arrayed Viral High-Content Screen

Jason Moffat;Dorre A. Grueneberg;Xiaoping Yang;So Young Kim;So Young Kim

2058
Citations
CellProfiler 3.0: Next-generation image processing for biology.

Claire McQuin;Allen Goodman;Vasiliy Chernyshev;Vasiliy Chernyshev;Lee Kamentsky

1777
Citations
mTOR complex 1 regulates lipin 1 localization to control the SREBP pathway.

Timothy R. Peterson;Shomit S. Sengupta;Thurl E. Harris;Anne E. Carmack

1308
Citations
CellProfiler 4: improvements in speed, utility and usability.

David R. Stirling;Madison J. Swain-Bowden;Alice M. Lucas;Anne E. Carpenter

1173
Citations
CellProfiler: free, versatile software for automated biological image analysis.

Michael R. Lamprecht;David M. Sabatini;Anne E. Carpenter

1052
Citations
Cell Painting, a high-content image-based assay for morphological profiling using multiplexed fluorescent dyes

Mark-Anthony Bray;Shantanu Singh;Han Han;Chadwick T Davis

825
Citations
Biological imaging software tools

Kevin W. Eliceiri;Michael R. Berthold;Ilya G. Goldberg;Luis Ibáñez

667
Citations
Data-analysis strategies for image-based cell profiling

Juan C. Caicedo;Sam Cooper;Florian Heigwer;Scott Warchal

648
Citations
CellProfiler Analyst: data exploration and analysis software for complex image-based screens

Thouis R Jones;Thouis R Jones;In Han Kang;Douglas B Wheeler;Robert A Lindquist

639
Citations
Long-range directional movement of an interphase chromosome site.

Chien Hui Chuang;Anne E. Carpenter;Beata Fuchsova;Terezina Johnson

609
Citations
In germ cells of mouse embryonic ovaries, the decision to enter meiosis precedes premeiotic DNA replication

Andrew E Baltus;Douglas B Menke;Douglas B Menke;Yueh-Chiang Hu;Yueh-Chiang Hu;Mary L Goodheart;Mary L Goodheart

560
Citations
Annotated high-throughput microscopy image sets for validation.

Vebjorn Ljosa;Katherine L Sokolnicki;Anne E Carpenter

532
Citations
Scoring diverse cellular morphologies in image-based screens with iterative feedback and machine learning

Thouis R. Jones;Thouis R. Jones;Anne E. Carpenter;Anne E. Carpenter;Michael R. Lamprecht;Jason Moffat

460
Citations
An algorithm-based topographical biomaterials library to instruct cell fate

Hemant V. Unadkat;Marc Hulsman;Kamiel Cornelissen;Bernke J. Papenburg

412
Citations
Systematic genome-wide screens of gene function

Anne E. Carpenter;David M. Sabatini

410
Citations
Visualization of image data from cells to organisms

Thomas Walter;David W Shattuck;Richard Baldock;Mark E Bastin

328
Citations
CellProfiler Analyst: data exploration and analysis software for complex image-based screens

Douglas B. Wheeler;David M. Sabatini;In Han Kang;Polina Golland

25
Citations
Erratum: Visualization of image data from cells to organisms

Thomas Walter;David W. Shattuck;Richard Baldock;Mark E. Bastin

14
Citations