Andrew E. Jaffe

Overview

Best Publications

• The sva package for removing batch effects and other unwanted variation in high-throughput experiments

  Jeffrey T. Leek;W. Evan Johnson;Hilary S. Parker;Andrew E. Jaffe

  6520
  Citations

• Minfi: A flexible and comprehensive Bioconductor package for the analysis of Infinium DNA Methylation microarrays

  Martin J. Aryee;Andrew E. Jaffe;Hector Corrada-Bravo;Christine Ladd-Acosta

  3790
  Citations

• DNA methylation age of blood predicts all-cause mortality in later life.

  Riccardo E Marioni;Riccardo E Marioni;Sonia Shah;Allan F McRae;Brian H Chen

  1303
  Citations

• Transcriptome-wide isoform-level dysregulation in ASD, schizophrenia, and bipolar disorder

  Michael J. Gandal;Pan Zhang;Evi Hadjimichael;Rebecca L. Walker

  1256
  Citations

• Transcriptome-scale spatial gene expression in the human dorsolateral prefrontal cortex.

  Kristen R. Maynard;Leonardo Collado-Torres;Lukas M. Weber;Cedric Uytingco

  1232
  Citations

• Accounting for cellular heterogeneity is critical in epigenome-wide association studies

  Andrew E Jaffe;Rafael A Irizarry

  1048
  Citations

• Comprehensive functional genomic resource and integrative model for the human brain

  Daifeng Wang;Daifeng Wang;Shuang Liu;Jonathan Warrell;Hyejung Won

  1046
  Citations

• Ballgown bridges the gap between transcriptome assembly and expression analysis.

  Alyssa C Frazee;Geo Pertea;Andrew E Jaffe;Ben Langmead

  906
  Citations

• Bump hunting to identify differentially methylated regions in epigenetic epidemiology studies.

  Andrew E Jaffe;Peter Murakami;Hwajin Lee;Jeffrey T Leek

  816
  Citations

• Transcriptome-scale spatial gene expression in the human dorsolateral prefrontal cortex

  Kristen Maynard;Leonardo Collado Torres;Lukas M Weber;Cedric Uytingco

  596
  Citations

• Mapping DNA methylation across development, genotype and schizophrenia in the human frontal cortex

  Andrew E Jaffe;Yuan Gao;Amy Deep-Soboslay;Ran Tao

  548
  Citations

• Reproducible RNA-seq analysis using recount2.

  Leonardo Collado-Torres;Abhinav Nellore;Kai Kammers;Kai Kammers;Shannon E Ellis

  499
  Citations

• The PsychENCODE project

  Schahram Akbarian;Chunyu Liu;James A Knowles;Flora M Vaccarino

  449
  Citations

• Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium

  Santhi K. Ganesh;Santhi K. Ganesh;Neil A. Zakai;Frank J A Van Rooij;Nicole Soranzo;Nicole Soranzo

  413
  Citations

• Developmental and genetic regulation of the human cortex transcriptome illuminate schizophrenia pathogenesis.

  Andrew E Jaffe;Richard E Straub;Joo Heon Shin;Ran Tao

  397
  Citations

• Polyester: simulating RNA-seq datasets with differential transcript expression

  Alyssa C. Frazee;Andrew E. Jaffe;Ben Langmead;Jeffrey T. Leek

  340
  Citations

• Intersection of diverse neuronal genomes and neuropsychiatric disease: The Brain Somatic Mosaicism Network

  Michael J. McConnell;John V. Moran;Alexej Abyzov;Schahram Akbarian

  285
  Citations

• Convergence of placenta biology and genetic risk for schizophrenia.

  Gianluca Ursini;Gianluca Ursini;Gianluca Ursini;Giovanna Punzi;Giovanna Punzi;Qiang Chen;Stefano Marenco

  283
  Citations

• A Bayesian framework for multiple trait colocalization from summary association statistics.

  Claudia Giambartolomei;Jimmy Zhenli Liu;Wen Zhang;Mads Hauberg;Mads Hauberg

  262
  Citations

• Global DNA hypomethylation is associated with in utero exposure to cotinine and perfluorinated alkyl compounds.

  Rafael Guerrero-Preston;Lynn R. Goldman;Priscilla Brebi-Mieville;Carmen Ili-Gangas

  210
  Citations