Tomoaki Nishiyama

Best Publications

• The Physcomitrella Genome Reveals Evolutionary Insights into the Conquest of Land by Plants

  Stefan A. Rensing;Daniel Lang;Andreas D. Zimmer;Astrid Terry

  2104
  Citations

• The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.

  Jo Ann Banks;Tomoaki Nishiyama;Mitsuyasu Hasebe;Mitsuyasu Hasebe;John L. Bowman;John L. Bowman

  954
  Citations

• TCC: an R package for comparing tag count data with robust normalization strategies

  Jianqiang Sun;Tomoaki Nishiyama;Kentaro Shimizu;Koji Kadota

  645
  Citations

• The Chara Genome: Secondary Complexity and Implications for Plant Terrestrialization.

  Tomoaki Nishiyama;Hidetoshi Sakayama;Jan de Vries;Jan de Vries;Henrik Buschmann

  531
  Citations

• Comparative genomics of Physcomitrella patens gametophytic transcriptome and Arabidopsis thaliana: implication for land plant evolution.

  Tomoaki Nishiyama;Tomomichi Fujita;Tadasu Shin-I;Motoaki Seki

  418
  Citations

• Tagged Mutagenesis and Gene-trap in the Moss, Physcomitrella patens by Shuttle Mutagenesis

  Tomoaki Nishiyama;Yuji Hiwatashi;Keiko Sakakibara;Masahiro Kato

  387
  Citations

• Algal ancestor of land plants was preadapted for symbiosis

  Pierre-Marc Delaux;Pierre-Marc Delaux;Guru V. Radhakrishnan;Dhileepkumar Jayaraman;Jitender Cheema

  345
  Citations

• Anthoceros genomes illuminate the origin of land plants and the unique biology of hornworts

  Fay Wei Li;Tomoaki Nishiyama;Manuel Waller;Eftychios Frangedakis

  338
  Citations

• A membrane trafficking pathway regulated by the plant-specific RAB GTPase ARA6.

  Kazuo Ebine;Masaru Fujimoto;Yusuke Okatani;Tomoaki Nishiyama

  298
  Citations

• The GID1-Mediated Gibberellin Perception Mechanism Is Conserved in the Lycophyte Selaginella moellendorffii but Not in the Bryophyte Physcomitrella patens

  Ko Hirano;Masatoshi Nakajima;Kenji Asano;Tomoaki Nishiyama

  251
  Citations

• Class 1 KNOX genes are not involved in shoot development in the moss Physcomitrella patens but do function in sporophyte development.

  Keiko Sakakibara;Tomoaki Nishiyama;Hironori Deguchi;Mitsuyasu Hasebe;Mitsuyasu Hasebe

  210
  Citations

• Reannotation and extended community resources for the genome of the non-seed plant Physcomitrella patens provide insights into the evolution of plant gene structures and functions

  Andreas D Zimmer;Daniel Lang;Karol Buchta;Stephane Rombauts

  193
  Citations

• An ancestral function of strigolactones as symbiotic rhizosphere signals

  Unknown

  185
  Citations

• Involvement of auxin and a homeodomain-leucine zipper I gene in rhizoid development of the moss Physcomitrella patens

  Keiko Sakakibara;Keiko Sakakibara;Tomoaki Nishiyama;Naomi Sumikawa;Rumiko Kofuji

  169
  Citations

• A polycomb repressive complex 2 gene regulates apogamy and gives evolutionary insights into early land plant evolution

  Yosuke Okano;Naoki Aono;Yuji Hiwatashi;Takashi Murata

  159
  Citations

• WOX13-like genes are required for reprogramming of leaf and protoplast cells into stem cells in the moss Physcomitrella patens

  Keiko Sakakibara;Keiko Sakakibara;Pascal Reisewitz;Pascal Reisewitz;Tsuyoshi Aoyama;Tsuyoshi Aoyama;Thomas Friedrich

  155
  Citations

• Comparative genome sequencing reveals genomic signature of extreme desiccation tolerance in the anhydrobiotic midge

  Oleg Gusev;Oleg Gusev;Oleg Gusev;Yoshitaka Suetsugu;Richard Cornette;Takeshi Kawashima

  154
  Citations

• Chloroplast Phylogeny Indicates That Bryophytes Are Monophyletic

  Tomoaki Nishiyama;Paul G. Wolf;Masanori Kugita;Robert B. Sinclair

  149
  Citations

• Genome of the pitcher plant Cephalotus reveals genetic changes associated with carnivory.

  Kenji Fukushima;Kenji Fukushima;Kenji Fukushima;Xiaodong Fang;David Alvarez-Ponce;Huimin Cai

  147
  Citations

• Characterization of MADS-box genes in charophycean green algae and its implication for the evolution of MADS-box genes

  Yoichi Tanabe;Mitsuyasu Hasebe;Hiroyuki Sekimoto;Tomoaki Nishiyama

  144
  Citations