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Biology and Biochemistry
Denmark
2026

D-Index & Metrics

Biology and Biochemistry

D-Index
110
Citations
133839
World Ranking
954
National Ranking
8

Research.com Recognitions

  • 2026 - Research.com Biology and Biochemistry in Denmark Leader Award
  • 2025 - Research.com Biology and Biochemistry in Denmark Leader Award

Overview

Lars Juhl Jensen is affiliated with the University of Copenhagen in Denmark. Their research work spans several intersecting fields primarily within biochemistry, genetics, and molecular biology.

Their main fields of study include:

  • Biochemistry, Genetics and Molecular Biology

Within these, notable subfields of study encompass:

  • Molecular Biology
  • Artificial Intelligence
  • Genetics
  • Spectroscopy
  • Oncology

Key research topics addressed in their published work involve:

  • Bioinformatics and Genomic Networks
  • Biomedical Text Mining and Ontologies
  • Gene expression and cancer classification
  • Advanced Proteomics Techniques and Applications
  • Topic Modeling
  • Single-cell and spatial transcriptomics
  • Computational Drug Discovery Methods

Among the recent papers published by Lars Juhl Jensen are:

  • The STRING database in 2021: customizable protein-protein networks, and functional characterization of user-uploaded gene/measurement sets (2020, Nucleic Acids Research)
  • The STRING database in 2023: protein-protein association networks and functional enrichment analyses for any sequenced genome of interest (2022, Nucleic Acids Research)
  • Improved metagenome binning and assembly using deep variational autoencoders (2021, Nature Biotechnology)
  • Correction to 'The STRING database in 2021: customizable protein-protein networks, and functional characterization of user-uploaded gene/measurement sets' (2021, Nucleic Acids Research)
  • eggNOG 6.0: enabling comparative genomics across 12,535 organisms (2022, Nucleic Acids Research)

Frequent publication venues for their research include:

  • bioRxiv (Cold Spring Harbor Laboratory)
  • Zenodo (CERN European Organization for Nuclear Research)
  • Nucleic Acids Research
  • Bioinformatics
  • Nature Communications

Lars Juhl Jensen has collaborated extensively with several researchers, including:

  • Katerina Nastou
  • Nadezhda T. Doncheva
  • Sampo Pyysalo
  • Mikaela Koutrouli
  • Marie Locard-Paulet

Best Publications

  • STRING v11: protein-protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets.

    Damian Szklarczyk;Annika L. Gable;David Lyon;Alexander Junge

  • STRING v10: protein–protein interaction networks, integrated over the tree of life

    Damian Szklarczyk;Andrea Franceschini;Stefan Wyder;Kristoffer Forslund

  • The STRING database in 2021: customizable protein-protein networks, and functional characterization of user-uploaded gene/measurement sets.

    Damian Szklarczyk;Annika L. Gable;Katerina C. Nastou;David Lyon

  • The STRING database in 2017: quality-controlled protein-protein association networks, made broadly accessible.

    Damian Szklarczyk;John H. Morris;Helen Cook;Michael Kuhn

  • STRING v9.1: protein-protein interaction networks, with increased coverage and integration

    Andrea Franceschini;Damian Szklarczyk;Sune Frankild;Michael Kuhn

  • eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses.

    Jaime Huerta-Cepas;Damian Szklarczyk;Davide Heller;Ana Hernández-Plaza

  • The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored

    Damian Szklarczyk;Andrea Franceschini;Michael Kuhn;Milan Simonovic

  • Proteome survey reveals modularity of the yeast cell machinery

    Anne-Claude Gavin;Patrick Aloy;Paola Grandi;Roland Krause

  • Fast Genome-Wide Functional Annotation through Orthology Assignment by eggNOG-Mapper

    Jaime Huerta-Cepas;Kristoffer Forslund;Luis Pedro Coelho;Damian Szklarczyk;Damian Szklarczyk

  • STRING 8—a global view on proteins and their functional interactions in 630 organisms

    Lars J Jensen;Michael Kuhn;Manuel Stark;Samuel Chaffron

  • eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences

    Jaime Huerta-Cepas;Damian Szklarczyk;Damian Szklarczyk;Kristoffer Forslund;Helen Cook

  • STRING: known and predicted protein-protein associations, integrated and transferred across organisms

    Christian von Mering;Lars Juhl Jensen;Berend Snel;Sean D. Hooper

  • Mining electronic health records: towards better research applications and clinical care

    Peter B Jensen;Lars Juhl Jensen;Søren Brunak;Søren Brunak

  • Cytoscape StringApp: Network Analysis and Visualization of Proteomics Data.

    Nadezhda T. Doncheva;John H. Morris;Jan Gorodkin;Lars J. Jensen

  • Quantitative Phosphoproteomics Reveals Widespread Full Phosphorylation Site Occupancy During Mitosis

    Jesper V. Olsen;Michiel Vermeulen;Anna Santamaria;Chanchal Kumar

  • Protein Disorder Prediction: Implications for Structural Proteomics

    Rune Linding;Lars Juhl Jensen;Francesca Diella;Peer Bork

  • Drug Target Identification Using Side-Effect Similarity

    Monica Campillos;Michael Kuhn;Anne-Claude Gavin;Lars Juhl Jensen;Lars Juhl Jensen

  • STITCH 5: augmenting protein–chemical interaction networks with tissue and affinity data

    Damian Szklarczyk;Alberto Santos;Christian von Mering;Lars Juhl Jensen

  • Feature-based prediction of non-classical and leaderless protein secretion.

    Jannick Dyrløv Bendtsen;Lars Juhl Jensen;Nikolaj Blom;Gunnar von Heijne

  • The SIDER database of drugs and side effects

    Michael Kuhn;Ivica Letunic;Lars Juhl Jensen;Peer Bork;Peer Bork

Frequent Co-Authors

Peer Bork
Peer Bork European Molecular Biology Laboratory
Søren Brunak
Søren Brunak University of Copenhagen
Jesper V. Olsen
Jesper V. Olsen University of Copenhagen
Christian von Mering
Christian von Mering University of Zurich
Flemming Pociot
Flemming Pociot Steno Diabetes Center
Jan Gorodkin
Jan Gorodkin University of Copenhagen
Peter Rossing
Peter Rossing University of Copenhagen
Matthias Mann
Matthias Mann Max Planck Institute of Biochemistry
Michael L. Nielsen
Michael L. Nielsen University of Copenhagen
Torben Hansen
Torben Hansen University of Copenhagen

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