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D-Index & Metrics

Biology and Biochemistry

D-Index
69
Citations
15384
World Ranking
7477
National Ranking
3407

John M. Koomen publication distribution in Biology and Biochemistry in 2026

The chart shows the distribution of publications by all Research.com ranked scientists in the field of Biology and Biochemistry in 2026. The highlighted bar marks where John M. Koomen sits on this spectrum.

47–56 publications: 8 scientists 57–66 publications: 35 scientists 67–76 publications: 106 scientists 77–86 publications: 231 scientists 87–96 publications: 414 scientists 97–106 publications: 546 scientists 107–116 publications: 704 scientists 117–126 publications: 849 scientists 127–136 publications: 980 scientists 137–146 publications: 942 scientists 147–156 publications: 969 scientists 157–166 publications: 950 scientists 167–176 publications: 951 scientists 177–186 publications: 915 scientists 187–196 publications: 787 scientists 197–206 publications: 841 scientists 207–216 publications: 735 scientists 217–226 publications: 709 scientists 227–236 publications: 651 scientists 237–246 publications: 605 scientists 247–256 publications: 510 scientists 257–266 publications: 524 scientists 267–276 publications: 434 scientists 277–286 publications: 418 scientists 287–296 publications: 350 scientists 297–306 publications: 363 scientists 307–316 publications: 315 scientists 317–326 publications: 296 scientists 327–336 publications: 261 scientists 337–346 publications: 240 scientists 347–356 publications: 219 scientists 357–366 publications: 197 scientists 367–376 publications: 154 scientists 377–386 publications: 161 scientists 387–396 publications: 155 scientists 397–406 publications: 145 scientists 407–416 publications: 124 scientists 417–426 publications: 112 scientists 427–436 publications: 132 scientists 437–446 publications: 116 scientists 447–456 publications: 99 scientists 457–466 publications: 81 scientists 467–476 publications: 91 scientists 477–486 publications: 80 scientists 487–496 publications: 80 scientists 497–506 publications: 60 scientists 507–516 publications: 36 scientists 517–526 publications: 46 scientists 527–536 publications: 54 scientists 537–546 publications: 44 scientists 547–556 publications: 43 scientists 557–566 publications: 43 scientists 567–576 publications: 42 scientists 577–586 publications: 25 scientists 587–596 publications: 34 scientists 597–606 publications: 23 scientists 607–616 publications: 33 scientists 617–626 publications: 31 scientists 627–636 publications: 27 scientists 637–646 publications: 25 scientists 647–656 publications: 28 scientists 657–666 publications: 34 scientists 667–676 publications: 18 scientists 677–686 publications: 16 scientists 687–696 publications: 10 scientists 697–706 publications: 12 scientists 707–716 publications: 21 scientists 717–726 publications: 12 scientists 727–736 publications: 12 scientists 737–746 publications: 10 scientists 747–756 publications: 7 scientists 757–766 publications: 13 scientists 767–776 publications: 15 scientists 777–786 publications: 13 scientists 787–796 publications: 9 scientists 797–806 publications: 9 scientists 807–816 publications: 7 scientists 817–826 publications: 4 scientists 827–836 publications: 9 scientists 837–846 publications: 7 scientists 847–856 publications: 3 scientists 857–866 publications: 5 scientists 867–876 publications: 5 scientists 877–886 publications: 11 scientists 887–896 publications: 3 scientists 897–906 publications: 4 scientists 907–916 publications: 7 scientists 917–926 publications: 5 scientists 927–936 publications: 6 scientists 937–946 publications: 6 scientists 947–956 publications: 3 scientists 957–966 publications: 7 scientists 967–976 publications: 2 scientists 977–986 publications: 2 scientists 987–996 publications: 1 scientists 997–1,006 publications: 5 scientists 1,007–1,016 publications: 2 scientists 1,017–1,026 publications: 2 scientists 1,027 publications: 1 scientists 1,028+ publications: 100 scientists
47 publications 1,028+

This scientist: 326 publications — 82nd percentile

82% of scientists in this discipline score the same or lower.

The last bar groups every scientist with 1,028 publications or more.

John M. Koomen D-index placement in Biology and Biochemistry in 2026

The chart shows the D-index (discipline H-index) distribution of Biology and Biochemistry scientists ranked by Research.com in 2026. The highlighted bar marks where John M. Koomen sits on this spectrum.

40–41 D-Index: 80 scientists 42–43 D-Index: 183 scientists 44–45 D-Index: 317 scientists 46–47 D-Index: 504 scientists 48–49 D-Index: 718 scientists 50–51 D-Index: 900 scientists 52–53 D-Index: 1,026 scientists 54–55 D-Index: 1,150 scientists 56–57 D-Index: 1,236 scientists 58–59 D-Index: 1,253 scientists 60–61 D-Index: 1,163 scientists 62–63 D-Index: 1,131 scientists 64–65 D-Index: 1,032 scientists 66–67 D-Index: 897 scientists 68–69 D-Index: 814 scientists 70–71 D-Index: 715 scientists 72–73 D-Index: 709 scientists 74–75 D-Index: 596 scientists 76–77 D-Index: 512 scientists 78–79 D-Index: 473 scientists 80–81 D-Index: 412 scientists 82–83 D-Index: 373 scientists 84–85 D-Index: 358 scientists 86–87 D-Index: 285 scientists 88–89 D-Index: 273 scientists 90–91 D-Index: 227 scientists 92–93 D-Index: 208 scientists 94–95 D-Index: 193 scientists 96–97 D-Index: 153 scientists 98–99 D-Index: 157 scientists 100–101 D-Index: 148 scientists 102–103 D-Index: 120 scientists 104–105 D-Index: 113 scientists 106–107 D-Index: 100 scientists 108–109 D-Index: 86 scientists 110–111 D-Index: 67 scientists 112–113 D-Index: 72 scientists 114–115 D-Index: 73 scientists 116–117 D-Index: 64 scientists 118–119 D-Index: 53 scientists 120–121 D-Index: 60 scientists 122–123 D-Index: 54 scientists 124–125 D-Index: 43 scientists 126–127 D-Index: 38 scientists 128–129 D-Index: 49 scientists 130–131 D-Index: 26 scientists 132–133 D-Index: 18 scientists 134–135 D-Index: 23 scientists 136–137 D-Index: 32 scientists 138–139 D-Index: 32 scientists 140–141 D-Index: 27 scientists 142–143 D-Index: 19 scientists 144–145 D-Index: 22 scientists 146–147 D-Index: 12 scientists 148–149 D-Index: 16 scientists 150–151 D-Index: 14 scientists 152–153 D-Index: 10 scientists 154–155 D-Index: 13 scientists 156–157 D-Index: 10 scientists 158–159 D-Index: 7 scientists 160–161 D-Index: 9 scientists 162–163 D-Index: 13 scientists 164–165 D-Index: 4 scientists 166 D-Index: 4 scientists 167+ D-Index: 98 scientists
40 D-Index 167+

This scientist: 69 D-Index — 63rd percentile

63% of scientists in this discipline score the same or lower.

The last bar groups every scientist with 167 D-Index or more.

Overview

John M. Koomen is affiliated with the University of South Florida in the United States. Their research spans several interconnected fields, primarily focusing on biochemistry, genetics, molecular biology, and medicine.

Their work includes significant contributions in the following areas:

  • Biochemistry, Genetics and Molecular Biology
  • Medicine

Within these fields, Koomen has concentrated on subfields such as molecular biology, oncology, pulmonary and respiratory medicine, immunology, and cancer research.

Key research topics covered by Koomen include:

  • Lung Cancer Treatments and Mutations
  • RNA modifications and cancer
  • Immunotherapy and Immune Responses
  • Histone Deacetylase Inhibitors Research
  • Protein Degradation and Inhibitors
  • Cancer Immunotherapy and Biomarkers
  • Peptidase Inhibition and Analysis

Koomen's most recent published papers demonstrate a focus on immunology, cellular metabolism, and cancer biology. Notable recent works include:

  • Macrophage Metabolism of Apoptotic Cell-Derived Arginine Promotes Continual Efferocytosis and Resolution of Injury (2020, Cell Metabolism)
  • Tumor-infiltrating lymphocyte treatment for anti-PD-1-resistant metastatic lung cancer: a phase 1 trial (2021, Nature Medicine)
  • Sirt2 Inhibition Enhances Metabolic Fitness and Effector Functions of Tumor-Reactive T Cells (2020, Cell Metabolism)
  • Macrophages use apoptotic cell-derived methionine and DNMT3A during efferocytosis to promote tissue resolution (2022, Nature Metabolism)
  • Macrophage-Derived Cholesterol Contributes to Therapeutic Resistance in Prostate Cancer (2021, Cancer Research)

The scientist has collaborated extensively with other researchers. Their frequent coauthors include:

  • Bin Fang
  • Eric B. Haura
  • Eric A. Welsh
  • Paul A. Stewart
  • Lancia Darville

Koomen's research has been published across a range of venues, with repeated contributions to:

  • Cancer Research
  • Regular and Young Investigator Award Abstracts
  • bioRxiv (Cold Spring Harbor Laboratory)
  • Nature Communications
  • Blood

Best Publications

  • HDAC6 Modulates Cell Motility by Altering the Acetylation Level of Cortactin

    Xiaohong Zhang;Zhigang Yuan;Yingtao Zhang;Sarah Yong

  • PTEN loss confers BRAF inhibitor resistance to melanoma cells through the suppression of BIM expression

    Kim H.T. Paraiso;Yun Xiang;Vito W. Rebecca;Ethan V. Abel

  • Targeted Peptide Measurements in Biology and Medicine: Best Practices for Mass Spectrometry-based Assay Development Using a Fit-for-Purpose Approach

    Steven A. Carr;Susan E. Abbatiello;Bradley L. Ackermann;Christoph Borchers

  • Feature extraction and quantification for mass spectrometry in biomedical applications using the mean spectrum

    Jeffrey S. Morris;Kevin R. Coombes;John Koomen;Keith A. Baggerly

  • Tumor-infiltrating lymphocyte treatment for anti-PD-1-resistant metastatic lung cancer: a phase 1 trial.

    Benjamin C. Creelan;Chao Wang;Jamie K. Teer;Eric M. Toloza

  • Anion template effect on the self-assembly and interconversion of metallacyclophanes.

    Cristian Saul Campos-Fernández;Brandi L. Schottel;Helen T. Chifotides;Jitendra K. Bera

  • Macrophage Metabolism of Apoptotic Cell-Derived Arginine Promotes Continual Efferocytosis and Resolution of Injury

    Arif Yurdagul;Manikandan Subramanian;Xiaobo Wang;Scott B. Crown

  • Induction of p21 by p53 following DNA damage inhibits both Cdk4 and Cdk2 activities

    Guangan He;Zahid H Siddik;Zaifeng Huang;Ruoning Wang

  • A chemical and phosphoproteomic characterization of dasatinib action in lung cancer.

    Jiannong Li;Uwe Rix;Bin Fang;Yun Bai

  • Direct tandem mass spectrometry reveals limitations in protein profiling experiments for plasma biomarker discovery.

    John M. Koomen;Donghui Li;Lian Chun Xiao;Thomas C. Liu

  • Comparative Analyses of the Three-dimensional Structures and Enzymatic Properties of α, β, γ, and δ Isoforms of Ca2+-Calmodulin-dependent Protein Kinase II

    Tara R. Gaertner;Steven J. Kolodziej;Dan Wang;Ryuji Kobayashi

  • SIRT1 deacetylates the DNA methyltransferase 1 (DNMT1) protein and alters its activities.

    Lirong Peng;Zhigang Yuan;Hongbo Ling;Kenji Fukasawa

  • Plasma protein profiling for diagnosis of pancreatic cancer reveals the presence of host response proteins.

    John M. Koomen;Lichen Nancy Shih;Kevin R. Coombes;Donghui Li

  • Ack1 Mediated AKT/PKB Tyrosine 176 Phosphorylation Regulates Its Activation

    Kiran Mahajan;Domenico Coppola;Sridevi Challa;Bin Fang

  • The HSP90 inhibitor XL888 overcomes BRAF inhibitor resistance mediated through diverse mechanisms

    Kim H.T. Paraiso;H. Eirik Haarberg;Elizabeth Wood;Vito W. Rebecca

  • Fine-tuning the ring-size of metallacyclophanes: a rational approach to molecular pentagons.

    Cristian Saul Campos-Fernández;Rodolphe Clérac;John M. Koomen;David H. Russell

  • Chronic acidosis in the tumour microenvironment selects for overexpression of LAMP2 in the plasma membrane.

    Mehdi Damaghi;Narges K. Tafreshi;Mark C. Lloyd;Robert Sprung

  • Lipid/Peptide/Nucleotide Separation with MALDI-Ion Mobility-TOF MS

    Amina S. Woods;Michael Ugarov;Tom Egan;John Koomen

  • MPP8 mediates the interactions between DNA methyltransferase Dnmt3a and H3K9 methyltransferase GLP/G9a.

    Yanqi Chang;Lidong Sun;Kenji Kokura;John R. Horton

  • Abstract 5370: PTEN loss confers BRAF inhibitor resistance to melanoma cells through the suppression of BIM expression

    Kim H. Paraiso;Vito Rebecca;Inna V. Fedorenko;Yun Xiang

Frequent Co-Authors

Eric B. Haura
Eric B. Haura University of South Florida
Jane L. Messina
Jane L. Messina University of South Florida
Ryuji Kobayashi
Ryuji Kobayashi The University of Texas MD Anderson Cancer Center
William S. Dalton
William S. Dalton University of South Florida
Vernon K. Sondak
Vernon K. Sondak University of South Florida
David H. Russell
David H. Russell Texas A&M University
Edward Seto
Edward Seto George Washington University
John L. Cleveland
John L. Cleveland Moffitt Cancer Center
Robert J. Gillies
Robert J. Gillies Moffitt Cancer Center
Alvaro N.A. Monteiro
Alvaro N.A. Monteiro University of South Florida

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