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Genetics

D-Index
92
Citations
37244
World Ranking
994
National Ranking
13

Overview

Joaquín Dopazo is affiliated with the Institute of Biomedicine of Seville in Spain. Their research spans a range of topics within medicine and biochemistry, genetics, and molecular biology, with notable focus on molecular biology and infectious diseases.

This scientist's work includes publications in key fields such as SARS-CoV-2 and COVID-19 research, bioinformatics and genomic networks, cell image analysis techniques, computational drug discovery methods, COVID-19 clinical research studies, genetic associations and epidemiology, and genomics and rare diseases.

Recent published papers include:

  • Transparency and reproducibility in artificial intelligence (2020, Nature)
  • Reporting guidelines for human microbiome research: the STORMS checklist (2021, Nature Medicine)
  • DOME: recommendations for supervised machine learning validation in biology (2021, Archivio Istituzionale della Ricerca, Universita Degli Studi Di Milano)
  • Nivolumab and sunitinib combination in advanced soft tissue sarcomas: a multicenter, single-arm, phase Ib/II trial (2020, Journal for ImmunoTherapy of Cancer)
  • COVID-19 Disease Map, building a computational repository of SARS-CoV-2 virus-host interaction mechanisms (2020, Scientific Data)

Frequent co-authors in Joaquín Dopazo's publications include:

  • Carlos Loucera (57 joint publications)
  • María Peña-Chilet (53 joint publications)
  • Javier Pérez-Florido (32 joint publications)
  • Rosario Carmona (30 joint publications)
  • Carlos S. Casimiro-Soriguer (29 joint publications)

Publication venues where Joaquín Dopazo has contributed frequently include:

  • bioRxiv (Cold Spring Harbor Laboratory) with 19 publications
  • Zenodo (CERN European Organization for Nuclear Research) with 13 publications
  • Scientific Reports with 6 publications
  • International Journal of Molecular Sciences with 4 publications
  • Faculty of 1000 Research Ltd with 4 publications

Their primary scientific disciplines are Medicine and Biochemistry, Genetics and Molecular Biology, with a particular emphasis on subfields such as Molecular Biology, Infectious Diseases, Genetics, Epidemiology, and Cancer Research.

Best Publications

  • High-throughput functional annotation and data mining with the Blast2GO suite.

    Stefan Götz;Juan Miguel García-Gómez;Javier Terol;Tim D. Williams

  • Differential expression in RNA-seq: A matter of depth

    Sonia Tarazona;Fernando García-Alcalde;Joaquín Dopazo;Alberto Ferrer

  • FatiGO: a web tool for finding significant associations of Gene Ontology terms with groups of genes

    Fátima Al-Shahrour;Ramón Díaz-Uriarte;Joaquín Dopazo

  • Qualimap: evaluating next generation sequencing alignment data

    Fernando García-Alcalde;Konstantin Okonechnikov;José Carbonell;Luis M. Cruz

  • The Microarray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models

    Leming Shi;Gregory Campbell;Wendell D. Jones;Fabien Campagne

  • A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium

    Zhenqiang Su;Paweł P. Łabaj;Sheng Li;Jean Thierry-Mieg

  • Genomics of the origin and evolution of Citrus

    Guohong Albert Wu;Javier Terol;Victoria Ibanez;Antonio López-García

  • A hierarchical unsupervised growing neural network for clustering gene expression patterns

    Javier Herrero;Alfonso Valencia;Joaqu ´ õn Dopazo

  • Changes in the pattern of DNA methylation associate with twin discordance in systemic lupus erythematosus

    Biola M. Javierre;Agustin F. Fernandez;Julia Richter;Fatima Al-Shahrour

  • ETE: a python Environment for Tree Exploration.

    Jaime Huerta-Cepas;Joaquín Dopazo;Toni Gabaldón

  • Initial genomics of the human nucleolus.

    Attila Németh;Ana Conesa;Javier Santoyo-Lopez;Ignacio Medina

  • Differential Lipid Partitioning Between Adipocytes and Tissue Macrophages Modulates Macrophage Lipotoxicity and M2/M1 Polarization in Obese Mice

    Xavier Prieur;Crystal Y.L. Mok;Vidya R. Velagapudi;Vanessa Núñez

  • Babelomics: an integrative platform for the analysis of transcriptomics, proteomics and genomic data with advanced functional profiling

    Ignacio Medina;José Carbonell;Luis Pulido;Sara C. Madeira

  • BABELOMICS: a systems biology perspective in the functional annotation of genome-scale experiments

    Fátima Al-Shahrour;Pablo Minguez;Joaquín Tárraga;David Montaner

  • FatiGO +: a functional profiling tool for genomic data. Integration of functional annotation, regulatory motifs and interaction data with microarray experiments

    Fátima Al-Shahrour;Pablo Minguez;Joaquín Tárraga;Ignacio Medina

  • BABELOMICS: a suite of web tools for functional annotation and analysis of groups of genes in high-throughput experiments

    Fátima Al-Shahrour;Pablo Minguez;Juan M. Vaquerizas;Lucía Conde

  • A Phylogenetic Analysis of 34 Chloroplast Genomes Elucidates the Relationships between Wild and Domestic Species within the Genus Citrus

    Jose Carbonell-Caballero;Roberto Alonso;Victoria Ibañez;Javier Terol

  • PupasView: a visual tool for selecting suitable SNPs, with putative pathological effect in genes, for genotyping purposes

    Lucía Conde;Juan M. Vaquerizas;Carles Ferrer-Costa;Xavier de la Cruz

  • SNPeffect 4.0: on-line prediction of molecular and structural effects of protein-coding variants

    Greet De Baets;Joost J. J. van Durme;Joke Reumers;Sebastian Maurer-Stroh

  • Phylogenetic Reconstruction Using an Unsupervised Growing Neural Network That Adopts the Topology of a Phylogenetic Tree

    Joaquín Dopazo;José María Carazo

Frequent Co-Authors

Fatima Al-Shahrour
Fatima Al-Shahrour Spanish National Cancer Research Centre
Ana Conesa
Ana Conesa University of Florida
Juan M. Vaquerizas
Juan M. Vaquerizas Max Planck Society
Javier Herrero
Javier Herrero University College London
Jaime Huerta-Cepas
Jaime Huerta-Cepas Technical University of Madrid
Antonio Vidal-Puig
Antonio Vidal-Puig University of Cambridge
Francisco Sobrino
Francisco Sobrino Spanish National Research Council
Andrés Moya
Andrés Moya University of Valencia
Manel Esteller
Manel Esteller Josep Carreras Leukaemia Research Institute
Toni Gabaldón
Toni Gabaldón Institució Catalana de Recerca i Estudis Avançats

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