World's Best Scientists 2026 revealed!
Chad Nusbaum

Chad Nusbaum

D-Index & Metrics

Genetics

D-Index
94
Citations
163154
World Ranking
913
National Ranking
454

Overview

What is he best known for?

The fields of study he is best known for:

  • Gene
  • Genome
  • DNA

His primary scientific interests are in Genetics, Genome, Genomics, Whole genome sequencing and Gene. In his works, Chad Nusbaum performs multidisciplinary study on Genetics and ChIP-exo. In the subject of general Genome, his work in Human genome, Genome evolution and Orthologous Gene is often linked to Anopheles, thereby combining diverse domains of study.

His research integrates issues of Chromosome, Locus and DNA sequencing in his study of Genomics. His Whole genome sequencing study incorporates themes from Botany, Oomycete and Phytophthora infestans. He has included themes like Phytophthora and Blight in his Gene study.

His most cited work include:

  • Model-based Analysis of ChIP-Seq (MACS) (8233 citations)
  • Structure, function and diversity of the healthy human microbiome (6128 citations)
  • Genome-wide maps of chromatin state in pluripotent and lineage-committed cells (3420 citations)

What are the main themes of his work throughout his whole career to date?

His main research concerns Genetics, Genome, Computational biology, Gene and Genomics. His research related to DNA sequencing, Human genome, Sequence analysis, Pathogen and Gene expression profiling might be considered part of Genetics. His Sequence analysis research integrates issues from RNA, Oligonucleotide, Illumina dye sequencing and Exon.

His Genome research is multidisciplinary, relying on both Phytophthora and Phytophthora infestans. His Computational biology research incorporates elements of RNA-Seq, Contig, Functional genomics, Chromatin and Personal genomics. His work in Genomics addresses subjects such as Sequence assembly, which are connected to disciplines such as Human genetics.

He most often published in these fields:

  • Genetics (70.45%)
  • Genome (45.45%)
  • Computational biology (23.86%)

What were the highlights of his more recent work (between 2014-2021)?

  • Genome (45.45%)
  • Genetics (70.45%)
  • Computational biology (23.86%)

In recent papers he was focusing on the following fields of study:

Genome, Genetics, Computational biology, Genomics and Sequence assembly are his primary areas of study. His Genome research is mostly focused on the topic Reference genome. His Genetics research is multidisciplinary, incorporating perspectives in Leaf spot, Bioinformatics and Virology.

His Computational biology research includes themes of Structural variation and Population genetics. The concepts of his Genomics study are interwoven with issues in Genome evolution and Chromosome breakage. Chad Nusbaum focuses mostly in the field of Sequence assembly, narrowing it down to topics relating to Human genome and, in certain cases, Sequence analysis, Human genetics and Viral integration.

Between 2014 and 2021, his most popular works were:

  • Cervicovaginal bacteria are a major modulator of host inflammatory responses in the female genital tract (280 citations)
  • Ebola virus epidemiology, transmission, and evolution during seven months in Sierra Leone (217 citations)
  • SvABA: genome-wide detection of structural variants and indels by local assembly (143 citations)

In his most recent research, the most cited papers focused on:

  • Gene
  • Genome
  • DNA

His primary areas of investigation include Genome, Genomics, Genetics, Cytokine and Tetrahymena. His Genome research is multidisciplinary, incorporating elements of Sequence analysis and DNA sequencing. The Genomics study combines topics in areas such as Computational biology, Human genetics, Contig and Sequence assembly.

His Genetics study frequently links to related topics such as Virology. His Cytokine research incorporates elements of Inflammation, Chemokine, Immune system and Young adult. His Tetrahymena study combines topics from a wide range of disciplines, such as Chromosome breakage, Genome project, Gene rearrangement and Genome evolution.

Best Publications

  • Initial sequencing and analysis of the human genome.

    Eric S. Lander;Lauren M. Linton;Bruce Birren;Chad Nusbaum

  • Full-length transcriptome assembly from RNA-Seq data without a reference genome.

    Manfred G Grabherr;Brian J Haas;Moran Yassour;Moran Yassour;Joshua Z Levin

  • Model-based Analysis of ChIP-Seq (MACS)

    Yong Zhang;Tao Liu;Clifford A Meyer;Jérôme Eeckhoute

  • Structure, function and diversity of the healthy human microbiome

    Curtis Huttenhower;Curtis Huttenhower;Dirk Gevers;Rob Knight;Rob Knight;Sahar Abubucker

  • Initial sequencing and comparative analysis of the mouse genome.

    Robert H. Waterston;Kerstin Lindblad-Toh;Ewan Birney;Jane Rogers

  • Genome-wide maps of chromatin state in pluripotent and lineage-committed cells

    Tarjei S. Mikkelsen;Manching Ku;Manching Ku;David B. Jaffe;Biju Issac;Biju Issac

  • A Draft Sequence of the Neandertal Genome

    Richard E. Green;Johannes Krause;Adrian W. Briggs;Tomislav Maricic

  • Large-Scale Identification, Mapping, and Genotyping of Single-Nucleotide Polymorphisms in the Human Genome

    David G. Wang;Jian-Bing Fan;Jian-Bing Fan;Chia-Jen Siao;Chia-Jen Siao;Anthony Berno;Anthony Berno

  • Genome-scale DNA methylation maps of pluripotent and differentiated cells

    Alexander Meissner;Tarjei S. Mikkelsen;Tarjei S. Mikkelsen;Hongcang Gu;Marius Wernig

  • A framework for human microbiome research

    Barbara A. Methé;Karen E. Nelson;Mihai Pop;Heather H. Creasy

  • Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype

    Olivier Jaillon;Jean-Marc Aury;Frédéric Brunet;Jean-Louis Petit

  • The genome sequence of the filamentous fungus Neurospora crassa

    James E. Galagan;Sarah E. Calvo;Katherine A. Borkovich;Eric U. Selker

  • The genome sequence of the rice blast fungus Magnaporthe grisea

    Ralph A. Dean;Nicholas J. Talbot;Daniel J. Ebbole;Mark L. Farman

  • High-quality draft assemblies of mammalian genomes from massively parallel sequence data

    Sante Gnerre;Iain MacCallum;Dariusz Przybylski;Filipe J. Ribeiro

  • Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans.

    Brian J Haas;Sophien Kamoun;Sophien Kamoun;Michael C Zody;Michael C Zody;Rays H Y Jiang;Rays H Y Jiang

  • Solution Hybrid Selection with Ultra-long Oligonucleotides for Massively Parallel Targeted Sequencing

    Andreas Gnirke;Alexandre Melnikov;Jared Maguire;Peter Rogov

  • Analyzing and minimizing PCR amplification bias in Illumina sequencing libraries

    Daniel Aird;Michael G Ross;Wei-Sheng Chen;Maxwell Danielsson

  • Genomic surveillance elucidates Ebola virus origin and transmission during the 2014 outbreak

    Stephen K. Gire;Stephen K. Gire;Augustine Goba;Kristian G. Andersen;Kristian G. Andersen;Rachel S G Sealfon;Rachel S G Sealfon

  • Ab initio reconstruction of cell type–specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs

    Mitchell Guttman;Manuel Garber;Joshua Z Levin;Julie Donaghey

  • Targeted next-generation sequencing of a cancer transcriptome enhances detection of sequence variants and novel fusion transcripts

    Joshua Z Levin;Michael F Berger;Xian Adiconis;Peter Rogov

Frequent Co-Authors

Eric S. Lander
Eric S. Lander Broad Institute
Bruce W. Birren
Bruce W. Birren Broad Institute
Michael C. Zody
Michael C. Zody New York Genome Center
Sarah Young
Sarah Young University of North Georgia
Andreas Gnirke
Andreas Gnirke Broad Institute
David B. Jaffe
David B. Jaffe Broad Institute
Joshua Z. Levin
Joshua Z. Levin Broad Institute
Brian J. Haas
Brian J. Haas Broad Institute
Qiandong Zeng
Qiandong Zeng LabCorp (United States)
Niall J. Lennon
Niall J. Lennon Broad Institute

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