Yuedong Yang

Overview

Best Publications

• Deep learning Enables Accurate Diagnosis of Novel Coronavirus (COVID-19) with CT images.

  Ying Song;Shuangjia Zheng;Liang Li;Xiang Zhang

  868
  Citations

• Capturing non-local interactions by long short-term memory bidirectional recurrent neural networks for improving prediction of protein secondary structure, backbone angles, contact numbers and solvent accessibility.

  Rhys Heffernan;Yuedong Yang;Kuldip K. Paliwal;Yaoqi Zhou

  455
  Citations

• Deep learning Enables Accurate Diagnosis of Novel Coronavirus (COVID-19) with CT images

  Song Ying;Shuangjia Zheng;Liang Li;Xiang Zhang

  455
  Citations

• Improving protein fold recognition and template-based modeling by employing probabilistic-based matching between predicted one-dimensional structural properties of query and corresponding native properties of templates

  Yuedong Yang;Eshel Faraggi;Huiying Zhao;Yaoqi Zhou

  431
  Citations

• Improving prediction of secondary structure, local backbone angles, and solvent accessible surface area of proteins by iterative deep learning.

  Rhys Heffernan;Kuldip Paliwal;James Lyons;Abdollah Dehzangi

  407
  Citations

• Improving protein disorder prediction by deep bidirectional long short-term memory recurrent neural networks.

  Jack Hanson;Yuedong Yang;Kuldip K. Paliwal;Yaoqi Zhou

  315
  Citations

• Predicting drug–protein interaction using quasi-visual question answering system

  Shuangjia Zheng;Yongjian Li;Sheng Chen;Jun Xu

  294
  Citations

• SPINE X: Improving protein secondary structure prediction by multistep learning coupled with prediction of solvent accessible surface area and backbone torsion angles

  Eshel Faraggi;Tuo Zhang;Tuo Zhang;Yuedong Yang;Yuedong Yang;Lukasz A. Kurgan;Lukasz A. Kurgan

  290
  Citations

• Sixty-five years of the long march in protein secondary structure prediction: the final stretch?

  Yuedong Yang;Jianzhao Gao;Jihua Wang;Rhys Heffernan

  281
  Citations

• Specific interactions for ab initio folding of protein terminal regions with secondary structures

  Yuedong Yang;Yaoqi Zhou

  271
  Citations

• Predicting Retrosynthetic Reactions Using Self-Corrected Transformer Neural Networks.

  Shuangjia Zheng;Jiahua Rao;Zhongyue Zhang;Jun Xu;Jun Xu

  251
  Citations

• Structural insights into the histone H1-nucleosome complex

  Bing-Rui Zhou;Hanqiao Feng;Hidenori Kato;Liang Dai

  231
  Citations

• Improving prediction of protein secondary structure, backbone angles, solvent accessibility and contact numbers by using predicted contact maps and an ensemble of recurrent and residual convolutional neural networks

  Jack Hanson;Kuldip K. Paliwal;Thomas Litfin;Yuedong Yang

  223
  Citations

• JAK2-binding long noncoding RNA promotes breast cancer brain metastasis.

  Shouyu Wang;Ke Liang;Qingsong Hu;Ping Li

  219
  Citations

• Accurate prediction of protein contact maps by coupling residual two-dimensional bidirectional long short-term memory with convolutional neural networks.

  Jack Hanson;Kuldip K. Paliwal;Thomas Litfin;Yuedong Yang;Yuedong Yang

  197
  Citations

• SPIDER2: A Package to Predict Secondary Structure, Accessible Surface Area, and Main-Chain Torsional Angles by Deep Neural Networks

  Yuedong Yang;Rhys Heffernan;Kuldip Paliwal;James Lyons

  187
  Citations

• Predicting backbone Cα angles and dihedrals from protein sequences by stacked sparse auto-encoder deep neural network.

  James G. Lyons;Abdollah Dehzangi;Abdollah Dehzangi;Rhys Heffernan;Alok Sharma;Alok Sharma

  180
  Citations

• Structure-aware protein-protein interaction site prediction using deep graph convolutional network.

  Qianmu Yuan;Jianwen Chen;Huiying Zhao;Yaoqi Zhou

  178
  Citations

• Ab initio folding of terminal segments with secondary structures reveals the fine difference between two closely related all-atom statistical energy functions

  Yuedong Yang;Yaoqi Zhou;Yaoqi Zhou

  175
  Citations

• Integrating multi-omics data through deep learning for accurate cancer prognosis prediction

  Hua Chai;Xiang Zhou;Zhongyue Zhang;Jiahua Rao

  162
  Citations

• Community-wide assessment of protein-interface modeling suggests improvements to design methodology

  Sarel J. Fleishman;Sarel J. Fleishman;Timothy A. Whitehead;Eva Maria Strauch;Jacob E. Corn;Jacob E. Corn

  156
  Citations

• Predicting Continuous Local Structure and the Effect of Its Substitution for Secondary Structure in Fragment-Free Protein Structure Prediction

  Eshel Faraggi;Yuedong Yang;Shesheng Zhang;Yaoqi Zhou;Yaoqi Zhou

  152
  Citations

• PharmKG: a dedicated knowledge graph benchmark for bomedical data mining

  Shuangjia Zheng;Jiahua Rao;Ying Song;Jixian Zhang

  152
  Citations

• Communicative Representation Learning on Attributed Molecular Graphs

  Ying Song;Shuangjia Zheng;Zhangming Niu;Zhang-hua Fu;Zhang-hua Fu

  143
  Citations