D-Index & Metrics Best Publications

D-Index & Metrics

Discipline name D-index D-index (Discipline H-index) only includes papers and citation values for an examined discipline in contrast to General H-index which accounts for publications across all disciplines. Citations Publications World Ranking National Ranking
Genetics and Molecular Biology D-index 45 Citations 12,501 96 World Ranking 4325 National Ranking 18

Overview

What is he best known for?

The fields of study he is best known for:

  • Gene
  • Bacteria
  • Genome

His main research concerns Genome, Genetics, Computational biology, Genomics and Phylogenetics. While working on this project, he studies both Genome and Ladderane. His Computational biology research is multidisciplinary, relying on both Proteome, Functional genes, Taxonomic rank, GenBank and Metagenomics.

His studies deal with areas such as Sequence alignment and Profiling as well as Metagenomics. His studies in Genomics integrate themes in fields like Evolutionary biology and Genome project. His work deals with themes such as Heat shock protein, Ecology, Pyrosequencing, Chaperone and Exon, which intersect with Phylogenetics.

His most cited work include:

  • Genome sequencing and analysis of the model grass Brachypodium distachyon (1433 citations)
  • eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences (1142 citations)
  • Complete nitrification by Nitrospira bacteria (922 citations)

What are the main themes of his work throughout his whole career to date?

The scientist’s investigation covers issues in Genome, Genetics, Gene, Metagenomics and Computational biology. Genome is closely attributed to Evolutionary biology in his research. His work in Gene covers topics such as Microbiology which are related to areas like Virulence, Escherichia coli, Listeria monocytogenes and Chlamydiae.

Thomas Rattei focuses mostly in the field of Metagenomics, narrowing it down to matters related to Ecology and, in some cases, Archaea. His research in Computational biology tackles topics such as Sequence which are related to areas like Protein sequencing. His Genomics research focuses on Annotation and how it relates to Genome project and Information retrieval.

He most often published in these fields:

  • Genome (32.87%)
  • Genetics (31.94%)
  • Gene (22.69%)

What were the highlights of his more recent work (between 2017-2021)?

  • Metagenomics (18.52%)
  • Genome (32.87%)
  • Evolutionary biology (11.57%)

In recent papers he was focusing on the following fields of study:

Thomas Rattei mainly investigates Metagenomics, Genome, Evolutionary biology, Gene and Computational biology. His Metagenomics research is multidisciplinary, incorporating perspectives in Microbiome, Candidatus, Archaea and Desulfosporosinus. The subject of his Archaea research is within the realm of Genetics.

His work on Whole genome sequencing and Genomics as part of general Genome study is frequently linked to Ecophysiology, bridging the gap between disciplines. His Evolutionary biology research integrates issues from Phylogenetics, Clade, Strain and Mobile genetic elements. His Computational biology study also includes fields such as

  • In silico and related Genetic Databases, Virus, Annotation and Bacterial genome size,
  • Genome project which is related to area like Sequence analysis and Reference genome.

Between 2017 and 2021, his most popular works were:

  • Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea (512 citations)
  • eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses. (410 citations)
  • Minimum information about an uncultivated virus genome (MIUVIG) (123 citations)

In his most recent research, the most cited papers focused on:

  • Gene
  • Bacteria
  • Genome

Thomas Rattei mainly focuses on Metagenomics, Genome, Evolutionary biology, Computational biology and Archaea. Thomas Rattei combines subjects such as Microbiome, Ecology, Host and Actinobacteria with his study of Metagenomics. His research in Genome intersects with topics in Bacteriophage and Nutrient.

As part of the same scientific family, he usually focuses on Evolutionary biology, concentrating on Phylogenetics and intersecting with Equus, Domestication and Y chromosome. His research integrates issues of Genome project, Sequence analysis, Whole genome sequencing and Genomics in his study of Computational biology. His Genetics research incorporates themes from Protease and Sponge.

This overview was generated by a machine learning system which analysed the scientist’s body of work. If you have any feedback, you can contact us here.

Best Publications

Genome sequencing and analysis of the model grass Brachypodium distachyon

John P. Vogel;David F. Garvin;Todd C. Mockler;Jeremy Schmutz.
Nature (2010)

2278 Citations

eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences

Jaime Huerta-Cepas;Damian Szklarczyk;Damian Szklarczyk;Kristoffer Forslund;Helen Cook.
Nucleic Acids Research (2016)

1343 Citations

Complete nitrification by Nitrospira bacteria

Holger Daims;Elena V. Lebedeva;Petra Pjevac;Ping Han.
Nature (2015)

1225 Citations

Deciphering the evolution and metabolism of an anammox bacterium from a community genome

Marc Strous;Eric Pelletier;Sophie Mangenot;Thomas Rattei.
Nature (2006)

1039 Citations

The dynamic genome of Hydra

Jarrod A. Chapman;Ewen F. Kirkness;Oleg Simakov;Oleg Simakov;Steven E. Hampson.
Nature (2010)

724 Citations

Gepard: a rapid and sensitive tool for creating dotplots on genome scale.

Jan Krumsiek;Roland Arnold;Thomas Rattei.
Bioinformatics (2007)

572 Citations

A Nitrospira metagenome illuminates the physiology and evolution of globally important nitrite-oxidizing bacteria

Sebastian Lücker;Michael Wagner;Frank Maixner;Eric Pelletier.
Proceedings of the National Academy of Sciences of the United States of America (2010)

560 Citations

Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea

Robert M. Bowers;Nikos C. Kyrpides;Ramunas Stepanauskas;Miranda Harmon-Smith.
Nature Biotechnology (2018)

540 Citations

Distinct gene set in two different lineages of ammonia-oxidizing archaea supports the phylum Thaumarchaeota.

Anja Spang;Roland Hatzenpichler;Céline Brochier-Armanet;Thomas Rattei;Thomas Rattei.
Trends in Microbiology (2010)

528 Citations

eggNOG v3.0: orthologous groups covering 1133 organisms at 41 different taxonomic ranges

Sean Powell;Damian Szklarczyk;Kalliopi Trachana;Alexander Roth.
Nucleic Acids Research (2012)

522 Citations

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Best Scientists Citing Thomas Rattei

Mike S. M. Jetten

Mike S. M. Jetten

Radboud University Nijmegen

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Michael Wagner

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European Molecular Biology Laboratory

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Nicole S. Webster

Nicole S. Webster

Australian Institute of Marine Science

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Jillian F. Banfield

Jillian F. Banfield

University of California, Berkeley

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Gilbert Greub

Gilbert Greub

University of Lausanne

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Jaap S. Sinninghe Damsté

Jaap S. Sinninghe Damsté

Royal Netherlands Institute for Sea Research

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Matthias Horn

Matthias Horn

University of Vienna

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Ji-Dong Gu

Ji-Dong Gu

Technion – Israel Institute of Technology

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Boran Kartal

Boran Kartal

Max Planck Society

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Holger Daims

Holger Daims

University of Vienna

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Jaroslav Doležel

Jaroslav Doležel

Czech Academy of Sciences

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Ute Hentschel

GEOMAR Helmholtz Centre for Ocean Research Kiel

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Christa Schleper

University of Vienna

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Simon Roux

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Lawrence Berkeley National Laboratory

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Ji-Zheng He

Ji-Zheng He

University of Melbourne

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