World's Best Scientists 2026 revealed!

D-Index & Metrics

Genetics

D-Index
73
Citations
17268
World Ranking
2061
National Ranking
940

Overview

John F. McDonald is affiliated with the Georgia Institute of Technology in the United States. Their research spans multiple aspects of biochemistry, genetics, molecular biology, and medicine, with a particular focus on cancer biology and its molecular mechanisms.

The primary fields of study for McDonald include:

  • Biochemistry, Genetics and Molecular Biology
  • Medicine

Within these broad fields, their subfields of study are more specialized, covering:

  • Molecular Biology
  • Cancer Research
  • Oncology
  • Genetics
  • Biomedical Engineering

McDonald's research topics have a focused emphasis on cancer and genomic studies. The main topics they explore are:

  • Cancer Genomics and Diagnostics
  • Gene expression and cancer classification
  • Bioinformatics and Genomic Networks
  • RNA modifications and cancer
  • Epigenetics and DNA Methylation
  • Metabolomics and Mass Spectrometry Studies
  • Ovarian cancer diagnosis and treatment

The scientist has contributed to numerous publications, with select recent papers illustrating the scope and interdisciplinarity of their work:

  • High throughput, label-free isolation of circulating tumor cell clusters in meshed microwells (2022) published in Nature Communications
  • Leveraging TCGA gene expression data to build predictive models for cancer drug response (2020) published in BMC Bioinformatics
  • An atlas of transposable element-derived alternative splicing in cancer (2020) published in Philosophical Transactions of the Royal Society B Biological Sciences
  • MEDICASCY: A Machine Learning Approach for Predicting Small-Molecule Drug Side Effects, Indications, Efficacy, and Modes of Action (2020) published in Molecular Pharmaceutics
  • Cancer Exacerbates Chemotherapy-Induced Sensory Neuropathy (2020) published in Cancer Research

McDonald frequently collaborates with a core group of co-authors, indicating ongoing research partnerships. Key frequent co-authors include:

  • Dongjo Ban
  • Lilya V. Matyunina
  • Stephen N. Housley
  • I. King Jordan
  • Benedict B. Benigno

The venues in which McDonald most commonly publishes reflect a focus on oncology and immunology, along with contributions to broader interdisciplinary biological sciences. Frequent publication venues include:

  • Cancer Research
  • Gynecologic Oncology
  • bioRxiv (Cold Spring Harbor Laboratory)
  • The Journal of Immunology
  • Nature Communications

Best Publications

  • Gold nanorod assisted near-infrared plasmonic photothermal therapy (PPTT) of squamous cell carcinoma in mice.

    Erin B. Dickerson;Erik C. Dreaden;Xiaohua Huang;Ivan H. El-Sayed

  • Cell stiffness is a biomarker of the metastatic potential of ovarian cancer cells

    Wenwei Xu;Roman Mezencev;Byungkyu Kim;Lijuan Wang

  • The identification of urban employment subcenters

    John F. McDonald

  • Monetary Policy and the Housing Bubble

    John F. McDonald;Houston H. Stokes

  • Suburban Subcenters and Employment Density in Metropolitan Chicago

    Daniel P. McMillen;John F. McDonald

  • LTR_STRUC: a novel search and identification program for LTR retrotransposons

    Eugene M. McCarthy;John F. McDonald

  • Econometric studies of urban population density: a survey.

    John F. McDonald

  • A nonparametric analysis of employment density in a polycentric city

    Daniel P. McMillen;John F. McDonald

  • GENETIC VARIATION IN NATURAL POPULATIONS OF FIVE DROSOPHILA SPECIES AND THE HYPOTHESIS OF THE SELECTIVE NEUTRALITY OF PROTEIN POLYMORPHISMS

    Francisco J. Ayala;Martin L. Tracey;Lorraine G. Barr;John F. McDonald

  • Gene expression profiling supports the hypothesis that human ovarian surface epithelia are multipotent and capable of serving as ovarian cancer initiating cells

    Nathan J Bowen;L DeEtte Walker;Lilya V Matyunina;Sanjay Logani

  • Magnetic Nanoparticle−Peptide Conjugates for in Vitro and in Vivo Targeting and Extraction of Cancer Cells

    Kenneth E. Scarberry;Erin B. Dickerson;John F. McDonald;Z. John Zhang

  • Evolution and consequences of transposable elements.

    John F. McDonald

  • Emerging roles for PAX8 in ovarian cancer and endosalpingeal development.

    Nathan J. Bowen;Sanjay Logani;Erin B. Dickerson;Laura B. Kapa

  • Peptide-Functionalized Nanogels for Targeted siRNA Delivery

    William H. Blackburn;Erin B. Dickerson;Michael H. Smith;John F. McDonald

  • Drosophila Euchromatic LTR Retrotransposons are Much Younger Than the Host Species in Which They Reside

    Nathan J. Bowen;John F. McDonald

  • Overexpression of miR-429 induces mesenchymal-to-epithelial transition (MET) in metastatic ovarian cancer cells.

    Jing Chen;Lijuan Wang;Lilya V. Matyunina;Christopher G. Hill

  • Copia is transcriptionally responsive to environmental stress

    Dennis J. Strand;John F. McDonald

  • Genetic response to environmental heterogeneity.

    John F. Mcdonald;Francisco J. Ayala

  • L1 and HERV-W retrotransposons are hypomethylated in human ovarian carcinomas.

    Laura Menendez;Benedict B Benigno;John F McDonald

  • Homogeneous and organized differentiation within embryoid bodies induced by microsphere-mediated delivery of small molecules

    Richard L. Carpenedo;Andrés M. Bratt-Leal;Ross A. Marklein;Scott A. Seaman

Frequent Co-Authors

Daniel P. McMillen
Daniel P. McMillen University of Illinois at Urbana-Champaign
I. King Jordan
I. King Jordan Georgia Institute of Technology
Francisco J. Ayala
Francisco J. Ayala University of California, Irvine
Facundo M. Fernández
Facundo M. Fernández Georgia Institute of Technology
Alexander G. Gray
Alexander G. Gray Georgia Institute of Technology
Todd C. McDevitt
Todd C. McDevitt University of California, San Francisco
Jeffrey Skolnick
Jeffrey Skolnick Georgia Institute of Technology
Timothy C. Cope
Timothy C. Cope Georgia Institute of Technology
Sue E. Crawford
Sue E. Crawford Baylor College of Medicine
L. Andrew Lyon
L. Andrew Lyon Chapman University

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