Ilya Shmulevich

Best Publications

• The cancer genome atlas pan-cancer analysis project

  John N Weinstein;John N Weinstein;Eric A. Collisson;Gordon B Mills;Kenna R Mills Shaw;Kenna R Mills Shaw

  8777
  Citations

• Comprehensive molecular characterization of gastric adenocarcinoma

  Adam J. Bass;Vesteinn Thorsson;Ilya Shmulevich;Sheila M. Reynolds

  6006
  Citations

• The Somatic Genomic Landscape of Glioblastoma

  Cameron W. Brennan;Roel G W Verhaak;Aaron McKenna;Benito Campos

  5516
  Citations

• Cell-of-Origin Patterns Dominate the Molecular Classification of 10,000 Tumors from 33 Types of Cancer.

  Katherine A. Hoadley;Christina Yau;Christina Yau;Toshinori Hinoue;Denise M. Wolf

  2565
  Citations

• Probabilistic Boolean networks: a rule-based uncertainty model for gene regulatory networks

  Ilya Shmulevich;Edward R. Dougherty;Seungchan Kim;Wei Zhang

  2011
  Citations

• Spatial Organization and Molecular Correlation of Tumor-Infiltrating Lymphocytes Using Deep Learning on Pathology Images.

  Joel Saltz;Rajarsi Gupta;Le Hou;Tahsin Kurc

  1003
  Citations

• Comprehensive Analysis of Alternative Splicing Across Tumors from 8,705 Patients.

  André Kahles;Kjong-Van Lehmann;Nora C Toussaint;Matthias Hüser

  907
  Citations

• From Boolean to probabilistic Boolean networks as models of genetic regulatory networks

  I. Shmulevich;E.R. Dougherty;Wei Zhang

  734
  Citations

• Gene perturbation and intervention in probabilistic Boolean networks.

  Ilya Shmulevich;Edward R. Dougherty;Wei Zhang

  380
  Citations

• On Learning Gene Regulatory Networks Under the Boolean Network Model

  Harri Lähdesmäki;Ilya Shmulevich;Olli Yli-Harja

  364
  Citations

• Activities and Sensitivities in Boolean Network Models

  Ilya Shmulevich;Stuart A. Kauffman;Stuart A. Kauffman

  313
  Citations

• Eukaryotic cells are dynamically ordered or critical but not chaotic

  Ilya Shmulevich;Stuart A. Kauffman;Maximino Aldana

  300
  Citations

• Fewer permutations, more accurate P-values

  Theo A. Knijnenburg;Lodewyk F. A. Wessels;Marcel J. T. Reinders;Ilya Shmulevich

  286
  Citations

• Gene expression dynamics in the macrophage exhibit criticality.

  Matti Nykter;Nathan D. Price;Maximino Aldana;Stephen A. Ramsey

  267
  Citations

• Probabilistic Boolean Networks: The Modeling and Control of Gene Regulatory Networks

  Ilya Shmulevich;Edward R. Dougherty

  255
  Citations

• Binary analysis and optimization-based normalization of gene expression data

  Ilya Shmulevich;Wei Zhang

  250
  Citations

• Systematic analysis of splice-site-creating mutations in cancer

  Reyka G Jayasinghe;Song Cao;Qingsong Gao;Michael C Wendl

  246
  Citations

• The Cancer Microbiome: Distinguishing Direct and Indirect Effects Requires a Systemic View

  Joao B. Xavier;Vincent B. Young;Joseph Skufca;Fiona Ginty

  245
  Citations

• Highly accurate two-gene classifier for differentiating gastrointestinal stromal tumors and leiomyosarcomas

  Nathan D. Price;Jonathan Trent;Adel K. El-Naggar;David Cogdell

  242
  Citations

• Robust quantification of in vitro angiogenesis through image analysis

  A. Niemisto;V. Dunmire;O. Yli-Harja;Wei Zhang

  234
  Citations