World's Best Scientists 2026 revealed!
Haruyuki Atomi

Haruyuki Atomi

D-Index & Metrics

Biology and Biochemistry

D-Index
65
Citations
12686
World Ranking
9322
National Ranking
628

Haruyuki Atomi publication distribution in Biology and Biochemistry in 2026

The chart shows the distribution of publications by all Research.com ranked scientists in the field of Biology and Biochemistry in 2026. The highlighted bar marks where Haruyuki Atomi sits on this spectrum.

47–56 publications: 8 scientists 57–66 publications: 35 scientists 67–76 publications: 106 scientists 77–86 publications: 231 scientists 87–96 publications: 414 scientists 97–106 publications: 546 scientists 107–116 publications: 704 scientists 117–126 publications: 849 scientists 127–136 publications: 980 scientists 137–146 publications: 942 scientists 147–156 publications: 969 scientists 157–166 publications: 950 scientists 167–176 publications: 951 scientists 177–186 publications: 915 scientists 187–196 publications: 787 scientists 197–206 publications: 841 scientists 207–216 publications: 735 scientists 217–226 publications: 709 scientists 227–236 publications: 651 scientists 237–246 publications: 605 scientists 247–256 publications: 510 scientists 257–266 publications: 524 scientists 267–276 publications: 434 scientists 277–286 publications: 418 scientists 287–296 publications: 350 scientists 297–306 publications: 363 scientists 307–316 publications: 315 scientists 317–326 publications: 296 scientists 327–336 publications: 261 scientists 337–346 publications: 240 scientists 347–356 publications: 219 scientists 357–366 publications: 197 scientists 367–376 publications: 154 scientists 377–386 publications: 161 scientists 387–396 publications: 155 scientists 397–406 publications: 145 scientists 407–416 publications: 124 scientists 417–426 publications: 112 scientists 427–436 publications: 132 scientists 437–446 publications: 116 scientists 447–456 publications: 99 scientists 457–466 publications: 81 scientists 467–476 publications: 91 scientists 477–486 publications: 80 scientists 487–496 publications: 80 scientists 497–506 publications: 60 scientists 507–516 publications: 36 scientists 517–526 publications: 46 scientists 527–536 publications: 54 scientists 537–546 publications: 44 scientists 547–556 publications: 43 scientists 557–566 publications: 43 scientists 567–576 publications: 42 scientists 577–586 publications: 25 scientists 587–596 publications: 34 scientists 597–606 publications: 23 scientists 607–616 publications: 33 scientists 617–626 publications: 31 scientists 627–636 publications: 27 scientists 637–646 publications: 25 scientists 647–656 publications: 28 scientists 657–666 publications: 34 scientists 667–676 publications: 18 scientists 677–686 publications: 16 scientists 687–696 publications: 10 scientists 697–706 publications: 12 scientists 707–716 publications: 21 scientists 717–726 publications: 12 scientists 727–736 publications: 12 scientists 737–746 publications: 10 scientists 747–756 publications: 7 scientists 757–766 publications: 13 scientists 767–776 publications: 15 scientists 777–786 publications: 13 scientists 787–796 publications: 9 scientists 797–806 publications: 9 scientists 807–816 publications: 7 scientists 817–826 publications: 4 scientists 827–836 publications: 9 scientists 837–846 publications: 7 scientists 847–856 publications: 3 scientists 857–866 publications: 5 scientists 867–876 publications: 5 scientists 877–886 publications: 11 scientists 887–896 publications: 3 scientists 897–906 publications: 4 scientists 907–916 publications: 7 scientists 917–926 publications: 5 scientists 927–936 publications: 6 scientists 937–946 publications: 6 scientists 947–956 publications: 3 scientists 957–966 publications: 7 scientists 967–976 publications: 2 scientists 977–986 publications: 2 scientists 987–996 publications: 1 scientists 997–1,006 publications: 5 scientists 1,007–1,016 publications: 2 scientists 1,017–1,026 publications: 2 scientists 1,027 publications: 1 scientists 1,028+ publications: 100 scientists
47 publications 1,028+

This scientist: 299 publications — 78th percentile

78% of scientists in this discipline score the same or lower.

The last bar groups every scientist with 1,028 publications or more.

Haruyuki Atomi D-index placement in Biology and Biochemistry in 2026

The chart shows the D-index (discipline H-index) distribution of Biology and Biochemistry scientists ranked by Research.com in 2026. The highlighted bar marks where Haruyuki Atomi sits on this spectrum.

40–41 D-Index: 80 scientists 42–43 D-Index: 183 scientists 44–45 D-Index: 317 scientists 46–47 D-Index: 504 scientists 48–49 D-Index: 718 scientists 50–51 D-Index: 900 scientists 52–53 D-Index: 1,026 scientists 54–55 D-Index: 1,150 scientists 56–57 D-Index: 1,236 scientists 58–59 D-Index: 1,253 scientists 60–61 D-Index: 1,163 scientists 62–63 D-Index: 1,131 scientists 64–65 D-Index: 1,032 scientists 66–67 D-Index: 897 scientists 68–69 D-Index: 814 scientists 70–71 D-Index: 715 scientists 72–73 D-Index: 709 scientists 74–75 D-Index: 596 scientists 76–77 D-Index: 512 scientists 78–79 D-Index: 473 scientists 80–81 D-Index: 412 scientists 82–83 D-Index: 373 scientists 84–85 D-Index: 358 scientists 86–87 D-Index: 285 scientists 88–89 D-Index: 273 scientists 90–91 D-Index: 227 scientists 92–93 D-Index: 208 scientists 94–95 D-Index: 193 scientists 96–97 D-Index: 153 scientists 98–99 D-Index: 157 scientists 100–101 D-Index: 148 scientists 102–103 D-Index: 120 scientists 104–105 D-Index: 113 scientists 106–107 D-Index: 100 scientists 108–109 D-Index: 86 scientists 110–111 D-Index: 67 scientists 112–113 D-Index: 72 scientists 114–115 D-Index: 73 scientists 116–117 D-Index: 64 scientists 118–119 D-Index: 53 scientists 120–121 D-Index: 60 scientists 122–123 D-Index: 54 scientists 124–125 D-Index: 43 scientists 126–127 D-Index: 38 scientists 128–129 D-Index: 49 scientists 130–131 D-Index: 26 scientists 132–133 D-Index: 18 scientists 134–135 D-Index: 23 scientists 136–137 D-Index: 32 scientists 138–139 D-Index: 32 scientists 140–141 D-Index: 27 scientists 142–143 D-Index: 19 scientists 144–145 D-Index: 22 scientists 146–147 D-Index: 12 scientists 148–149 D-Index: 16 scientists 150–151 D-Index: 14 scientists 152–153 D-Index: 10 scientists 154–155 D-Index: 13 scientists 156–157 D-Index: 10 scientists 158–159 D-Index: 7 scientists 160–161 D-Index: 9 scientists 162–163 D-Index: 13 scientists 164–165 D-Index: 4 scientists 166 D-Index: 4 scientists 167+ D-Index: 98 scientists
40 D-Index 167+

This scientist: 65 D-Index — 55th percentile

55% of scientists in this discipline score the same or lower.

The last bar groups every scientist with 167 D-Index or more.

Overview

Haruyuki Atomi is affiliated with Kyoto University in Japan and has contributed extensively to the field of Biochemistry, Genetics, and Molecular Biology through a variety of research projects. Their work spans multiple specialized subfields, including Molecular Biology, Materials Chemistry, Biochemistry, Ecology, and Biomedical Engineering.

Their research addresses key topics such as Enzyme Structure and Function, Genomics and Phylogenetic Studies, Amino Acid Enzymes and Metabolism, Metabolism and Genetic Disorders, Enzyme Production and Characterization, Biochemical and Molecular Research, and Microbial Community Ecology and Physiology.

Atomi's frequent collaborators include Takaaki Sato, Yuta Michimori, Isaac Cann, Jian-qiang Jin, and Kunio Miki. These partnerships have resulted in multiple publications across several high-profile scientific venues.

The scientist has published notably in journals like Applied and Environmental Microbiology, where they have seven publications, as well as the Journal of Bacteriology and bioRxiv (Cold Spring Harbor Laboratory), each with three publications. Other notable journals featuring their work include Nature Communications and Extremophiles.

Recent research papers authored or co-authored by Atomi cover topics from enzyme degradation mechanisms to structural biology and extremophile microbiology. These papers include:

  • Degradation of complex arabinoxylans by human colonic Bacteroidetes (2021, Nature Communications)
  • Structural Insight into [NiFe] Hydrogenase Maturation by Transient Complexes between Hyp Proteins (2020, Accounts of Chemical Research)
  • Thermophilic Degradation of Hemicellulose, a Critical Feedstock in the Production of Bioenergy and Other Value-Added Products (2020, Applied and Environmental Microbiology)
  • Extremophiles in a changing world (2024, Extremophiles)
  • Different Proteins Mediate Step-Wise Chromosome Architectures in Thermoplasma acidophilum and Pyrobaculum calidifontis (2020, Frontiers in Microbiology)

Best Publications

  • Complete genome sequence of the hyperthermophilic archaeon Thermococcus kodakaraensis KOD1 and comparison with Pyrococcus genomes

    Toshiaki Fukui;Haruyuki Atomi;Tamotsu Kanai;Rie Matsumi

  • Targeted Gene Disruption by Homologous Recombination in the Hyperthermophilic Archaeon Thermococcus kodakaraensis KOD1

    Takaaki Sato;Toshiaki Fukui;Haruyuki Atomi;Tadayuki Imanaka

  • Insights into the evolution of Archaea and eukaryotic protein modifier systems revealed by the genome of a novel archaeal group

    Takuro Nunoura;Yoshihiro Takaki;Jungo Kakuta;Shinro Nishi

  • Description of Thermococcus kodakaraensis sp. nov., a well studied hyperthermophilic archaeon previously reported as Pyrococcus sp. KOD1

    Haruyuki Atomi;Toshiaki Fukui;Tamotsu Kanai;Masaaki Morikawa

  • Improved and Versatile Transformation System Allowing Multiple Genetic Manipulations of the Hyperthermophilic Archaeon Thermococcus kodakaraensis

    Takaaki Sato;Toshiaki Fukui;Haruyuki Atomi;Tadayuki Imanaka

  • Low-temperature lipase from psychrotrophic Pseudomonas sp. strain KB700A.

    Naeem Rashid;Yuji Shimada;Satoshi Ezaki;Haruyuki Atomi

  • Archaeal type III RuBisCOs function in a pathway for AMP metabolism.

    Takaaki Sato;Haruyuki Atomi;Tadayuki Imanaka

  • Model organisms for genetics in the domain Archaea: methanogens, halophiles, Thermococcales and Sulfolobales.

    John A. Leigh;Sonja Verena Albers;Haruyuki Atomi;Thorsten Allers

  • Formate-driven growth coupled with H2 production

    Yun Jae Kim;Hyun Sook Lee;Eun Sook Kim;Seung Seob Bae

  • Extremely stable and versatile carboxylesterase from a hyperthermophilic archaeon

    Yuji Hotta;Satoshi Ezaki;Haruyuki Atomi;Tadayuki Imanaka

  • Thermoalkalophilic lipase of Bacillus thermocatenulatus. I. Molecular cloning, nucleotide sequence, purification and some properties

    Claudia Schmidt-Dannert;M.Luisa Rúa;Haruyuki Atomi;Rolf D Schmid

  • Construction of a starch-utilizing yeast by cell surface engineering.

    Toshiyuki Murai;Mitsuyoshi Ueda;Midori Yamamura;Haruyuki Atomi

  • A primordial and reversible TCA cycle in a facultatively chemolithoautotrophic thermophile

    Takuro Nunoura;Yoshito Chikaraishi;Yoshito Chikaraishi;Rikihisa Izaki;Takashi Suwa

  • Continuous hydrogen production by the hyperthermophilic archaeon, Thermococcus kodakaraensis KOD1.

    Tamotsu Kanai;Hiroyuki Imanaka;Akihito Nakajima;Kenetsu Uwamori

  • Reverse Gyrase Is Not a Prerequisite for Hyperthermophilic Life

    Haruyuki Atomi;Rie Matsumi;Tadayuki Imanaka

  • Isoprenoid biosynthesis in Archaea--biochemical and evolutionary implications.

    Rie Matsumi;Haruyuki Atomi;Arnold J. M. Driessen;John van der Oost

  • Disruption of a Sugar Transporter Gene Cluster in a Hyperthermophilic Archaeon Using a Host-Marker System Based on Antibiotic Resistance

    Rie Matsumi;Kenji Manabe;Toshiaki Fukui;Haruyuki Atomi

  • The Ribulose Monophosphate Pathway Substitutes for the Missing Pentose Phosphate Pathway in the Archaeon Thermococcus kodakaraensis

    Izumi Orita;Takaaki Sato;Hiroya Yurimoto;Nobuo Kato

  • Recent progress towards the application of hyperthermophiles and their enzymes.

    Haruyuki Atomi

  • Characterization of an Exo-β-d-Glucosaminidase Involved in a Novel Chitinolytic Pathway from the Hyperthermophilic Archaeon Thermococcus kodakaraensis KOD1

    Takeshi Tanaka;Toshiaki Fukui;Haruyuki Atomi;Tadayuki Imanaka

Frequent Co-Authors

Tadayuki Imanaka
Tadayuki Imanaka Ritsumeikan University
Kunio Miki
Kunio Miki Kyoto University
Mitsuyoshi Ueda
Mitsuyoshi Ueda Kyoto University
Atsuo Tanaka
Atsuo Tanaka Kyoto University
Toshiaki Fukui
Toshiaki Fukui Tokyo Institute of Technology
Kenichi Yoshikawa
Kenichi Yoshikawa Doshisha University
Masako Osumi
Masako Osumi Japan Women's University
Kunio Takeyasu
Kunio Takeyasu Kyoto University
Masahiro Takagi
Masahiro Takagi Kyoto Sangyo University
Elizaveta A. Bonch-Osmolovskaya
Elizaveta A. Bonch-Osmolovskaya Russian Academy of Sciences

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