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Haruyuki Atomi

Haruyuki Atomi

D-Index & Metrics

Biology and Biochemistry

D-Index
65
Citations
12686
World Ranking
9322
National Ranking
628

Overview

Haruyuki Atomi is affiliated with Kyoto University in Japan and has contributed extensively to the field of Biochemistry, Genetics, and Molecular Biology through a variety of research projects. Their work spans multiple specialized subfields, including Molecular Biology, Materials Chemistry, Biochemistry, Ecology, and Biomedical Engineering.

Their research addresses key topics such as Enzyme Structure and Function, Genomics and Phylogenetic Studies, Amino Acid Enzymes and Metabolism, Metabolism and Genetic Disorders, Enzyme Production and Characterization, Biochemical and Molecular Research, and Microbial Community Ecology and Physiology.

Atomi's frequent collaborators include Takaaki Sato, Yuta Michimori, Isaac Cann, Jian-qiang Jin, and Kunio Miki. These partnerships have resulted in multiple publications across several high-profile scientific venues.

The scientist has published notably in journals like Applied and Environmental Microbiology, where they have seven publications, as well as the Journal of Bacteriology and bioRxiv (Cold Spring Harbor Laboratory), each with three publications. Other notable journals featuring their work include Nature Communications and Extremophiles.

Recent research papers authored or co-authored by Atomi cover topics from enzyme degradation mechanisms to structural biology and extremophile microbiology. These papers include:

  • Degradation of complex arabinoxylans by human colonic Bacteroidetes (2021, Nature Communications)
  • Structural Insight into [NiFe] Hydrogenase Maturation by Transient Complexes between Hyp Proteins (2020, Accounts of Chemical Research)
  • Thermophilic Degradation of Hemicellulose, a Critical Feedstock in the Production of Bioenergy and Other Value-Added Products (2020, Applied and Environmental Microbiology)
  • Extremophiles in a changing world (2024, Extremophiles)
  • Different Proteins Mediate Step-Wise Chromosome Architectures in Thermoplasma acidophilum and Pyrobaculum calidifontis (2020, Frontiers in Microbiology)

Best Publications

  • Complete genome sequence of the hyperthermophilic archaeon Thermococcus kodakaraensis KOD1 and comparison with Pyrococcus genomes

    Toshiaki Fukui;Haruyuki Atomi;Tamotsu Kanai;Rie Matsumi

  • Targeted Gene Disruption by Homologous Recombination in the Hyperthermophilic Archaeon Thermococcus kodakaraensis KOD1

    Takaaki Sato;Toshiaki Fukui;Haruyuki Atomi;Tadayuki Imanaka

  • Insights into the evolution of Archaea and eukaryotic protein modifier systems revealed by the genome of a novel archaeal group

    Takuro Nunoura;Yoshihiro Takaki;Jungo Kakuta;Shinro Nishi

  • Description of Thermococcus kodakaraensis sp. nov., a well studied hyperthermophilic archaeon previously reported as Pyrococcus sp. KOD1

    Haruyuki Atomi;Toshiaki Fukui;Tamotsu Kanai;Masaaki Morikawa

  • Improved and Versatile Transformation System Allowing Multiple Genetic Manipulations of the Hyperthermophilic Archaeon Thermococcus kodakaraensis

    Takaaki Sato;Toshiaki Fukui;Haruyuki Atomi;Tadayuki Imanaka

  • Low-temperature lipase from psychrotrophic Pseudomonas sp. strain KB700A.

    Naeem Rashid;Yuji Shimada;Satoshi Ezaki;Haruyuki Atomi

  • Archaeal type III RuBisCOs function in a pathway for AMP metabolism.

    Takaaki Sato;Haruyuki Atomi;Tadayuki Imanaka

  • Model organisms for genetics in the domain Archaea: methanogens, halophiles, Thermococcales and Sulfolobales.

    John A. Leigh;Sonja Verena Albers;Haruyuki Atomi;Thorsten Allers

  • Formate-driven growth coupled with H2 production

    Yun Jae Kim;Hyun Sook Lee;Eun Sook Kim;Seung Seob Bae

  • Extremely stable and versatile carboxylesterase from a hyperthermophilic archaeon

    Yuji Hotta;Satoshi Ezaki;Haruyuki Atomi;Tadayuki Imanaka

  • Thermoalkalophilic lipase of Bacillus thermocatenulatus. I. Molecular cloning, nucleotide sequence, purification and some properties

    Claudia Schmidt-Dannert;M.Luisa Rúa;Haruyuki Atomi;Rolf D Schmid

  • Construction of a starch-utilizing yeast by cell surface engineering.

    Toshiyuki Murai;Mitsuyoshi Ueda;Midori Yamamura;Haruyuki Atomi

  • A primordial and reversible TCA cycle in a facultatively chemolithoautotrophic thermophile

    Takuro Nunoura;Yoshito Chikaraishi;Yoshito Chikaraishi;Rikihisa Izaki;Takashi Suwa

  • Continuous hydrogen production by the hyperthermophilic archaeon, Thermococcus kodakaraensis KOD1.

    Tamotsu Kanai;Hiroyuki Imanaka;Akihito Nakajima;Kenetsu Uwamori

  • Reverse Gyrase Is Not a Prerequisite for Hyperthermophilic Life

    Haruyuki Atomi;Rie Matsumi;Tadayuki Imanaka

  • Isoprenoid biosynthesis in Archaea--biochemical and evolutionary implications.

    Rie Matsumi;Haruyuki Atomi;Arnold J. M. Driessen;John van der Oost

  • Disruption of a Sugar Transporter Gene Cluster in a Hyperthermophilic Archaeon Using a Host-Marker System Based on Antibiotic Resistance

    Rie Matsumi;Kenji Manabe;Toshiaki Fukui;Haruyuki Atomi

  • The Ribulose Monophosphate Pathway Substitutes for the Missing Pentose Phosphate Pathway in the Archaeon Thermococcus kodakaraensis

    Izumi Orita;Takaaki Sato;Hiroya Yurimoto;Nobuo Kato

  • Recent progress towards the application of hyperthermophiles and their enzymes.

    Haruyuki Atomi

  • Characterization of an Exo-β-d-Glucosaminidase Involved in a Novel Chitinolytic Pathway from the Hyperthermophilic Archaeon Thermococcus kodakaraensis KOD1

    Takeshi Tanaka;Toshiaki Fukui;Haruyuki Atomi;Tadayuki Imanaka

Frequent Co-Authors

Tadayuki Imanaka
Tadayuki Imanaka Ritsumeikan University
Kunio Miki
Kunio Miki Kyoto University
Mitsuyoshi Ueda
Mitsuyoshi Ueda Kyoto University
Atsuo Tanaka
Atsuo Tanaka Kyoto University
Toshiaki Fukui
Toshiaki Fukui Tokyo Institute of Technology
Kenichi Yoshikawa
Kenichi Yoshikawa Doshisha University
Masako Osumi
Masako Osumi Japan Women's University
Kunio Takeyasu
Kunio Takeyasu Kyoto University
Masahiro Takagi
Masahiro Takagi Kyoto Sangyo University
Elizaveta A. Bonch-Osmolovskaya
Elizaveta A. Bonch-Osmolovskaya Russian Academy of Sciences

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