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Geoffrey J. Faulkner

Geoffrey J. Faulkner

D-Index & Metrics

Genetics

D-Index
47
Citations
21225
World Ranking
4082
National Ranking
137

Overview

Geoffrey J. Faulkner is a researcher affiliated with the University of Queensland in Australia. Their scientific contributions are situated primarily within the field of Biochemistry, Genetics, and Molecular Biology, encompassing 80 publications. Within this domain, their work largely focuses on Molecular Biology, Plant Science, Genetics, Neurology, and Immunology as subfields of study.

The main research topics addressed by Faulkner include:

  • Chromosomal and Genetic Variations
  • CRISPR and Genetic Engineering
  • RNA modifications and cancer
  • Epigenetics and DNA Methylation
  • Advanced biosensing and bioanalysis techniques
  • Genomics and Phylogenetic Studies
  • Ubiquitin and proteasome pathways

Frequent venues for Faulkner's work include:

  • bioRxiv (Cold Spring Harbor Laboratory), with 12 publications
  • Molecular Cell, with 4 publications
  • Genome biology, with 4 publications
  • Genome Research, with 2 publications
  • Nature Genetics, with 2 publications

Among their recent notable papers are:

  • Nanopore Sequencing Enables Comprehensive Transposable Element Epigenomic Profiling (2020, Molecular Cell)
  • Endogenous retroviruses in the origins and treatment of cancer (2021, Genome biology)
  • Transient naive reprogramming corrects hiPS cells functionally and epigenetically (2023, Nature)
  • No evidence of human genome integration of SARS-CoV-2 found by long-read DNA sequencing (2021, Cell Reports)
  • Processed pseudogenes: A substrate for evolutionary innovation (2021, BioEssays)

Geoffrey J. Faulkner regularly collaborates with several researchers, including Adam D. Ewing, Francisco J. Sánchez-Luque, Sandra R. Richardson, Seth W. Cheetham, and Natasha Jansz. These coauthors have contributed extensively to various projects alongside Faulkner, indicating a pattern of collaborative work in their research trajectory.

Best Publications

  • The Transcriptional Landscape of the Mammalian Genome

    P. Carninci;T. Kasukawa;S. Katayama;J. Gough

  • A promoter-level mammalian expression atlas

    Alistair R.R. Forrest;Hideya Kawaji;Michael Rehli;J. Kenneth Baillie

  • Bellerophon: a program to detect chimeric sequences in multiple sequence alignments

    Thomas Huber;Geoffrey Faulkner;Philip Hugenholtz

  • Analyses of pig genomes provide insight into porcine demography and evolution

    Martien A. M. Groenen;Alan L. Archibald;Hirohide Uenishi;Christopher K. Tuggle

  • Stem cell transcriptome profiling via massive-scale mRNA sequencing.

    Nicole Cloonan;Alistair R R Forrest;Alistair R R Forrest;Gabriel Kolle;Brooke B A Gardiner

  • The regulated retrotransposon transcriptome of mammalian cells.

    Geoffrey J Faulkner;Yasumasa Kimura;Carsten O Daub;Shivangi Wani

  • Somatic retrotransposition alters the genetic landscape of the human brain

    J. Kenneth Baillie;Mark W. Barnett;Kyle R. Upton;Daniel J. Gerhardt

  • Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells

    Erik Arner;Carsten O. Daub;Kristoffer Vitting-Seerup;Robin Andersson

  • The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line

    Harukazu Suzuki;Alistair R.R. Forrest;Erik Van Nimwegen;Carsten O. Daub

  • Tiny RNAs associated with transcription start sites in animals.

    Ryan J Taft;Evgeny A Glazov;Nicole Cloonan;Cas Simons

  • Endogenous Retrotransposition Activates Oncogenic Pathways in Hepatocellular Carcinoma

    Ruchi Shukla;Kyle R. Upton;Martin Muñoz-Lopez;Daniel J. Gerhardt

  • Conservation and divergence in Toll-like receptor 4-regulated gene expression in primary human versus mouse macrophages

    Kate Schroder;Katharine M Irvine;Martin S Taylor;Nilesh J Bokil

  • Ubiquitous L1 Mosaicism in Hippocampal Neurons

    Kyle R. Upton;Daniel J. Gerhardt;J. Samuel Jesuadian;Sandra R. Richardson

  • FANTOM5 CAGE profiles of human and mouse samples

    Shuhei Noguchi;Takahiro Arakawa;Shiro Fukuda;Masaaki Furuno

  • Extensive somatic L1 retrotransposition in colorectal tumors

    Szilvia Solyom;Adam D. Ewing;Eric P. Rahrmann;Tara T. Doucet

  • A global view of genomic information--moving beyond the gene and the master regulator.

    John S. Mattick;Ryan J. Taft;Geoffrey J. Faulkner

  • Point Mutations in Exon 1B of APC Reveal Gastric Adenocarcinoma and Proximal Polyposis of the Stomach as a Familial Adenomatous Polyposis Variant

    Jun Li;Susan L. Woods;Sue Healey;Jonathan Beesley

  • Overcoming challenges and dogmas to understand the functions of pseudogenes.

    Seth W. Cheetham;Geoffrey J. Faulkner;Marcel E. Dinger

  • The Role of Transposable Elements in Health and Diseases of the Central Nervous System

    Matthew T. Reilly;Geoffrey J. Faulkner;Joshua Dubnau;Igor Ponomarev

  • L1 Retrotransposons and Somatic Mosaicism in the Brain

    Sandra R. Richardson;Santiago Morell;Geoffrey J. Faulkner

Frequent Co-Authors

David A. Hume
David A. Hume University of Queensland
Alistair R. R. Forrest
Alistair R. R. Forrest Harry Perkins Institute of Medical Research
Christine A. Wells
Christine A. Wells University of Melbourne
Timo Lassmann
Timo Lassmann Telethon Kids Institute
Carsten O. Daub
Carsten O. Daub Karolinska Institute
Sean M. Grimmond
Sean M. Grimmond University of Melbourne

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