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Burak Erman

Burak Erman

D-Index & Metrics

Chemistry

D-Index
47
Citations
13108
World Ranking
15471
National Ranking
48

Overview

Burak Erman is affiliated with Koç University in Turkey and has contributed significantly to fields related to biochemistry, genetics, and molecular biology. Their research portfolio includes 46 publications predominantly in molecular biology and related subfields such as materials chemistry, radiology, nuclear medicine, imaging, immunology, and spectroscopy. The breadth of their work intersects multiple disciplines, reflecting a comprehensive approach to studying biomolecular processes.

Erman's scholarly output focuses on several principal research topics, including:

  • Protein Structure and Dynamics
  • Enzyme Structure and Function
  • Monoclonal and Polyclonal Antibodies Research
  • Mass Spectrometry Techniques and Applications
  • Glycosylation and Glycoproteins Research
  • Protein Kinase Regulation and GTPase Signaling
  • RNA and protein synthesis mechanisms

The scientist has published in various scientific venues, with recurrent contributions to:

  • bioRxiv (Cold Spring Harbor Laboratory)
  • Proteins Structure Function and Bioinformatics
  • Physical Biology
  • Bioinformatics
  • Journal of Molecular Biology

Selected recent publications by Burak Erman include:

  • "Comparative effects of oncogenic mutations G12C, G12V, G13D, and Q61H on local conformations and dynamics of K-Ras," 2020, Computational and Structural Biotechnology Journal
  • "Prediction of allosteric communication pathways in proteins," 2022, Bioinformatics
  • "Targeting mitochondrial DNA polymerase gamma for selective inhibition of MLH1 deficient colon cancer growth," 2022, PLoS ONE
  • "Synchronous and Asynchronous Response in Dynamically Perturbed Proteins," 2021, The Journal of Physical Chemistry B
  • "Binding Mechanism of Neutralizing Nanobodies Targeting SARS-CoV-2 Spike Glycoprotein," 2021, Journal of Chemical Information and Modeling

Frequent collaborators include:

  • Aysima Hacisuleyman
  • A. Erkip
  • Batu Erman
  • Mert Gür
  • Ahmet Gül

Best Publications

  • Direct evaluation of thermal fluctuations in proteins using a single-parameter harmonic potential

    Ivet Bahar;Ali Rana Atilgan;Burak Erman

  • Electrospinning of polyurethane fibers

    Mustafa Muammer Demir;I. Yilgor;E. Yilgor;Burak Erman

  • Gaussian Dynamics of Folded Proteins

    Turkan Haliloglu;Ivet Bahar;Burak Erman

  • Rubberlike Elasticity: A Molecular Primer

    James E. Mark;Burak Erman

  • Theory of elasticity of polymer networks. 3

    Paul J. Flory;Burak Erman

  • Vibrational dynamics of folded proteins: Significance of slow and fast motions in relation to function and stability

    Ivet Bahar;Ali Rana Atilgan;Melik C. Demirel;Burak Erman

  • Structures and properties of rubberlike networks

    Burak Erman;James E. Mark

  • Palladium nanoparticles by electrospinning from poly(acrylonitrile-co-acrylic acid)-PdCl2 solutions. Relations between preparation conditions, particle size, and catalytic activity

    Mustafa Muammer Demir;Mehmet Ali Gülgün;Yusuf Z. Menceloğlu;Burak Erman

  • Critical phenomena and transitions in swollen polymer networks and in linear macromolecules

    B. Erman;P. J. Flory

  • Collective Motions in HIV-1 Reverse Transcriptase: Examination of Flexibility and Enzyme Function

    Ivet Bahar;Burak Erman;Robert L. Jernigan;Ali Rana Atilgan

  • Relationships between stress, strain, and molecular constitution of polymer networks. Comparison of theory with experiments

    Burak Erman;Paul J. Flory

  • Theory of elasticity of polymer networks. II. The effect of geometric constraints on junctions

    Burak Erman;Paul J. Flory

  • Identification of kinetically hot residues in proteins

    Melik C. Demirel;Ali Rana Atılgan;Robert L. Jernigan;Burak Erman

  • UNDERSTANDING THE RECOGNITION OF PROTEIN STRUCTURAL CLASSES BY AMINO ACID COMPOSITION

    Ivet Bahar;Ivet Bahar;Ali Rana Atilgan;Robert L. Jernigan;Burak Erman

  • Mechanisms of the Exchange of Diblock Copolymers between Micelles at Dynamic Equilibrium

    Türkan Haliloǧlu;and Ivet Bahar;Burak Erman;Wayne L. Mattice

  • Theory of elasticity of amorphous networks: effect of constraints along chains

    Burak Erman;Lucien Monnerie

  • Rubber-Like Elasticity

    B. Erman

  • The Gaussian Network Model: Precise Predictions of Residue Fluctuations and Application to Binding Problems

    Burak Erman

  • Chain dimensions and fluctuations in random elastomeric networks. 1. Phantom Gaussian networks in the undeformed state

    A. Kloczkowski;J. E. Mark;B. Erman

  • Efficient Characterization of Collective Motions and Interresidue Correlations in Proteins by Low-Resolution Simulations†

    I. Bahar;B. Erman;T. Haliloglu;R. L. Jernigan

  • Elastomeric polymer networks

    James E. Mark;Burak Erman

Frequent Co-Authors

Ivet Bahar
Ivet Bahar University of Pittsburgh
James E. Mark
James E. Mark University of Cincinnati
Paul J. Flory
Paul J. Flory Stanford University
Attila Gursoy
Attila Gursoy Koç University
Oguz Okay
Oguz Okay Istanbul Technical University
Ozlem Keskin
Ozlem Keskin Koç University
Yaman Arkun
Yaman Arkun Koç University
Robert L. Jernigan
Robert L. Jernigan Iowa State University
Liliane Bokobza
Liliane Bokobza University of Bordeaux
Ahmet Gül
Ahmet Gül Istanbul University

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