2026 Aindrila Mukhopadhyay: Biology and Biochemistry Researcher – H-Index, Publications & Awards

Discipline name	D-Index	World Ranking	Current World Ranking	National Ranking	Current National Ranking	Publications	Citations
Biology and Biochemistry	60	11964	11019	5135	4603	248	12765

Overview

Aindrila Mukhopadhyay is affiliated with Lawrence Berkeley National Laboratory in the United States. Their research predominantly spans the field of Biochemistry, Genetics and Molecular Biology, with specific focus on Molecular Biology, Biomedical Engineering, Genetics, Plant Science, and Pharmacology.

Their main topics of work include microbial metabolic engineering and bioproduction, biofuel production and bioconversion, bacterial genetics and biotechnology, genomics and phylogenetic studies, enzyme catalysis and immobilization, viral infectious diseases and gene expression in insects, as well as plant biochemistry and biosynthesis.

Notable recent papers authored or co-authored by Mukhopadhyay include:

Microbial production of advanced biofuels (2021) in Nature Reviews Microbiology
Machine learning for metabolic engineering: A review (2020) in Metabolic Engineering
Genome-scale metabolic rewiring improves titers rates and yields of the non-native product indigoidine at scale (2020) in Nature Communications
Adaptive laboratory evolution of Pseudomonas putida KT2440 improves p-coumaric and ferulic acid catabolism and tolerance (2020) in Metabolic Engineering Communications
Unnatural biosynthesis by an engineered microorganism with heterologously expressed natural enzymes and an artificial metalloenzyme (2021) in Nature Chemistry

Frequent co-authors collaborating with Mukhopadhyay include:

Thomas Eng
Jay D. Keasling
Deepanwita Banerjee
Blake A. Simmons
Christopher J. Petzold

Their publication record shows recurrent contributions to several journals and venues, including:

bioRxiv (Cold Spring Harbor Laboratory)
Applied and Environmental Microbiology
Metabolic Engineering
ACS Sustainable Chemistry & Engineering
Nature Communications

Best Publications

Engineering microbial biofuel tolerance and export using efflux pumps

Mary J Dunlop;Zain Y Dossani;Zain Y Dossani;Heather L Szmidt;Heather L Szmidt;Hou Cheng Chu;Hou Cheng Chu

706
Citations
Identification and microbial production of a terpene-based advanced biofuel

Pamela P. Peralta-Yahya;Mario Ouellet;Mario Ouellet;Rossana Chan;Rossana Chan;Aindrila Mukhopadhyay;Aindrila Mukhopadhyay

678
Citations
Engineering dynamic pathway regulation using stress-response promoters

Robert H Dahl;Fuzhong Zhang;Jorge Alonso-Gutierrez;Jorge Alonso-Gutierrez;Edward Baidoo;Edward Baidoo

531
Citations
Biofuel alternatives to ethanol: pumping the microbial well

J.L. Fortman;J.L. Fortman;Swapnil Chhabra;Swapnil Chhabra;Aindrila Mukhopadhyay;Aindrila Mukhopadhyay;Howard Chou;Howard Chou

469
Citations
Modular engineering of L-tyrosine production in Escherichia coli.

Darmawi Juminaga;Edward E. K. Baidoo;Alyssa M. Redding-Johanson;Tanveer S. Batth

292
Citations
Functional Genomic Study of Exogenous n-Butanol Stress in Escherichia coli

Becky J. Rutherford;Becky J. Rutherford;Robert H. Dahl;Robert H. Dahl;Richard E. Price;Heather L. Szmidt;Heather L. Szmidt

259
Citations
A Cas9-based toolkit to program gene expression in Saccharomyces cerevisiae

Amanda Reider Apel;Amanda Reider Apel;Leo d'Espaux;Leo d'Espaux;Maren Wehrs;Maren Wehrs;Daniel Sachs;Daniel Sachs

255
Citations
Dynamic cyanobacterial response to hydration and dehydration in a desert biological soil crust

Lara Rajeev;Ulisses Nunes da Rocha;Niels Klitgord;Eric G Luning

244
Citations
Tolerance engineering in bacteria for the production of advanced biofuels and chemicals

Aindrila Mukhopadhyay

229
Citations
How sulphate-reducing microorganisms cope with stress: lessons from systems biology

Jizhong Zhou;Qiang He;Christopher L. Hemme;Aindrila Mukhopadhyay

226
Citations
Synthetic and systems biology for microbial production of commodity chemicals.

Victor Chubukov;Victor Chubukov;Aindrila Mukhopadhyay;Aindrila Mukhopadhyay;Christopher J Petzold;Christopher J Petzold;Jay D Keasling

216
Citations
Targeted proteomics for metabolic pathway optimization: application to terpene production.

Alyssa M. Redding-Johanson;Tanveer S. Batth;Rossana Chan;Rachel Krupa

205
Citations
Enhancing fatty acid production by the expression of the regulatory transcription factor FadR.

Fuzhong Zhang;Mario Ouellet;Mario Ouellet;Tanveer S. Batth;Tanveer S. Batth;Paul D. Adams;Paul D. Adams

203
Citations
Engineering Robust Production Microbes for Large-Scale Cultivation.

Maren Wehrs;Maren Wehrs;Deepti Tanjore;Thomas Eng;Jeff Lievense

202
Citations
Machine learning for metabolic engineering: A review.

Christopher E. Lawson;Jose Manuel Martí;Tijana Radivojevic;Sai Vamshi R. Jonnalagadda

198
Citations
Isolation and Proteomic Characterization of the Arabidopsis Golgi Defines Functional and Novel Components Involved in Plant Cell Wall Biosynthesis

Harriet T. Parsons;Katy Christiansen;Bernhard Knierim;Andrew Carroll

197
Citations
Salt Stress in Desulfovibrio vulgaris Hildenborough: an Integrated Genomics Approach

Aindrila Mukhopadhyay;Zhili He;Eric J. Alm;Adam P. Arkin;Adam P. Arkin

197
Citations
4.0 Å Resolution Cryo‐EM Structure of the Mammalian Chaperonin TRiC/CCT Reveals its Unique Subunit Arrangement

Yao Cong;Matthew L. Baker;Joanita Jakana;David Woolford

197
Citations
Microbial production of advanced biofuels

Jay Keasling;Hector Garcia Martin;Taek Soon Lee;Taek Soon Lee;Aindrila Mukhopadhyay;Aindrila Mukhopadhyay

195
Citations
A model for improving microbial biofuel production using a synthetic feedback loop.

Mary J. Dunlop;Jay D. Keasling;Jay D. Keasling;Aindrila Mukhopadhyay

185
Citations