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Biology and Biochemistry

D-Index
46
Citations
7588
World Ranking
18951
National Ranking
43

Overview

Stavros J. Hamodrakas is affiliated with the National and Kapodistrian University of Athens in Greece. Their research spans multiple domains within biochemistry, genetics, molecular biology, and materials science, with significant contributions also in several specialized subfields.

The scientist's work focuses extensively on the following main fields of study:

  • Biochemistry, Genetics and Molecular Biology
  • Materials Science

More specifically, the subfields covered include:

  • Molecular Biology
  • Materials Chemistry
  • Genetics
  • Computational Theory and Mathematics
  • Pharmacology

The core research topics addressed by Hamodrakas involve:

  • Crystallization and Solubility Studies
  • X-ray Diffraction in Crystallography
  • Bacterial Genetics and Biotechnology
  • Machine Learning in Bioinformatics
  • Lipid Membrane Structure and Behavior
  • Receptor Mechanisms and Signaling
  • Computational Drug Discovery Methods

Hamodrakas has contributed authorship to several recent papers published in notable venues. These include:

  • OMPdb: A Global Hub of Beta-Barrel Outer Membrane Proteins (2021) - Frontiers in Bioinformatics
  • The human GPCR signal transduction network (2021) - Network Modeling Analysis in Health Informatics and Bioinformatics
  • CCDC 2276764: Experimental Crystal Structure Determination (2023) - The Cambridge Structural Database
  • CCDC 2276765: Experimental Crystal Structure Determination (2023) - The Cambridge Structural Database

The scientific publications are often coauthored with recurring collaborators. Frequent co-authors include:

  • Margarita C. Theodoropoulou
  • Pantelis G. Bagos
  • Anastassis Perrakis
  • Ekaterini Antoniadou-Vyza
  • P. Tsitsa

Key publication venues where Hamodrakas has been active are:

  • The Cambridge Structural Database
  • Frontiers in Bioinformatics
  • Network Modeling Analysis in Health Informatics and Bioinformatics

Best Publications

  • PRED-TMBB: a web server for predicting the topology of β-barrel outer membrane proteins

    Pantelis G. Bagos;Theodore D. Liakopoulos;Ioannis C. Spyropoulos;Stavros J. Hamodrakas

  • A consensus method for the prediction of 'aggregation-prone' peptides in globular proteins.

    Antonios C. Tsolis;Nikos C. Papandreou;Vassiliki A. Iconomidou;Stavros J. Hamodrakas

  • Cytokine gene polymorphisms in periodontal disease: a meta-analysis of 53 studies including 4178 cases and 4590 controls.

    Georgios K. Nikolopoulos;Niki L. Dimou;Stavros J. Hamodrakas;Pantelis G. Bagos;Pantelis G. Bagos

  • Amyloids protect the silkmoth oocyte and embryo

    Vassiliki A. Iconomidou;Gert Vriend;Stavros J. Hamodrakas

  • A Hidden Markov Model method, capable of predicting and discriminating β-barrel outer membrane proteins

    Pantelis G Bagos;Theodore D Liakopoulos;Ioannis C Spyropoulos;Stavros J Hamodrakas

  • Multifaceted biological insights from a draft genome sequence of the tobacco hornworm moth, Manduca sexta

    Michael R. Kanost;Estela L. Arrese;Xiaolong Cao;Yun Ru Chen

  • CAST: an iterative algorithm for the complexity analysis of sequence tracts

    Vasilis J. Promponas;Anton J. Enright;Sophia Tsoka;David P. Kreil

  • A novel method for predicting transmembrane segments in proteins based on a statistical analysis of the SwissProt database: the PRED-TMR algorithm

    C. Pasquier;V.J. Promponas;G.A. Palaios;J.S. Hamodrakas

  • TMRPres2D: high quality visual representation of transmembrane protein models

    Ioannis C. Spyropoulos;Theodore D. Liakopoulos;Pantelis G. Bagos;Stavros J. Hamodrakas

  • Drosophila cuticular proteins with the R&R Consensus : Annotation and classification with a new tool for discriminating RR-1 and RR-2 sequences

    Maria V. Karouzou;Yannis Spyropoulos;Vassiliki A. Iconomidou;R.S. Cornman

  • Amyloidogenic determinants are usually not buried.

    Kimon K Frousios;Vassiliki A Iconomidou;Carolina-Maria Karletidi;Stavros J Hamodrakas

  • PredSL: a tool for the N-terminal sequence-based prediction of protein subcellular localization.

    Evangelia I. Petsalaki;Pantelis G. Bagos;Zoi I. Litou;Stavros J. Hamodrakas

  • Prediction of lipoprotein signal peptides in Gram-positive bacteria with a Hidden Markov Model.

    Pantelis G Bagos;Konstantinos D Tsirigos;Theodore D Liakopoulos;Stavros J Hamodrakas

  • Evaluation of methods for predicting the topology of β-barrel outer membrane proteins and a consensus prediction method

    Pantelis G Bagos;Theodore D Liakopoulos;Stavros J Hamodrakas

  • Evaluation of annotation strategies using an entire genome sequence

    Ioannis Iliopoulos;Sophia Tsoka;Miguel A. Andrade;Anton J. Enright

  • Unique features of the structural model of 'hard' cuticle proteins: implications for chitin-protein interactions and cross-linking in cuticle

    Vassiliki A. Iconomidou;Judith H. Willis;Stavros J. Hamodrakas

  • CutProtFam-Pred: detection and classification of putative structural cuticular proteins from sequence alone, based on profile hidden Markov models.

    Zoi S. Ioannidou;Margarita C. Theodoropoulou;Nikos C. Papandreou;Judith H. Willis

  • Prediction of signal peptides in archaea

    P.G. Bagos;P.G. Bagos;K.D. Tsirigos;S.K. Plessas;T.D. Liakopoulos

  • The GNB3 C825T polymorphism and essential hypertension: a meta-analysis of 34 studies including 14,094 cases and 17,760 controls.

    Pantelis G Bagos;Antigoni L Elefsinioti;Georgios K Nikolopoulos;Stavros J Hamodrakas

  • A structural model of the chitin-binding domain of cuticle proteins

    Stavros J. Hamodrakas;Judith H. Willis;Vassiliki A. Iconomidou

Frequent Co-Authors

Fotis C. Kafatos
Fotis C. Kafatos Harvard University
Georgios D. Chryssikos
Georgios D. Chryssikos National Hellenic Research Foundation
Anastassis Perrakis
Anastassis Perrakis Antoni van Leeuwenhoek Hospital
Effie Tsakalidou
Effie Tsakalidou Agricultural University of Athens
Philip Supply
Philip Supply Institut Pasteur
Bruno Pot
Bruno Pot Vrije Universiteit Brussel
Efstratios I. Kamitsos
Efstratios I. Kamitsos National Hellenic Research Foundation
Pierre Renault
Pierre Renault INRAE : Institut national de recherche pour l'agriculture, l'alimentation et l'environnement
Jochen Blom
Jochen Blom University of Giessen
Christos A. Ouzounis
Christos A. Ouzounis Aristotle University of Thessaloniki

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