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Computer Science

D-Index
34
Citations
6061
World Ranking
12050
National Ranking
213

Overview

Roberto Marabini is affiliated with the Autonomous University of Madrid in Spain. Their research primarily spans the fields of Biochemistry, Genetics and Molecular Biology, alongside Materials Science. Within these, Marabini has contributed notably to subfields such as Structural Biology, Surfaces, Coatings and Films, Molecular Biology, Materials Chemistry, and Infectious Diseases.

Their work covers a range of scientific topics including:

  • Advanced Electron Microscopy Techniques and Applications
  • Electron and X-Ray Spectroscopy Techniques
  • Machine Learning in Materials Science
  • Viral gastroenteritis research and epidemiology
  • Virus-based gene therapy research
  • Viral Infections and Immunology Research
  • Bacteriophages and microbial interactions

Roberto Marabini has published multiple papers in several well-known scientific journals. Their frequent publication venues include the Journal of Structural Biology with five publications, bioRxiv (Cold Spring Harbor Laboratory) with five preprints, as well as Science Advances, Journal of Visualized Experiments, and IUCrJ.

Recent published papers include:

  • Continuous flexibility analysis of SARS-CoV-2 spike prefusion structures, 2020, IUCrJ
  • ScipionTomo: Towards cryo-electron tomography software integration, reproducibility, and validation, 2022, Journal of Structural Biology
  • FSC-Q: a CryoEM map-to-atomic model quality validation based on the local Fourier shell correlation, 2021, Nature Communications
  • Algorithmic robustness to preferred orientations in single particle analysis by CryoEM, 2021, Journal of Structural Biology
  • Advances in Xmipp for Cryo-Electron Microscopy: From Xmipp to Scipion, 2021, Molecules

Collaborations have been an important aspect of Marabini's work, with frequent co-authors including:

  • J.M. Carazo (19 joint works)
  • Carlos Óscar S. Sorzano (18 joint works)
  • Marta Martínez (16 joint works)
  • Pablo Conesa (16 joint works)
  • Erney Ramírez-Aportela (14 joint works)

Best Publications

  • Scipion: A software framework toward integration, reproducibility and validation in 3D electron microscopy.

    J.M. de la Rosa-Trevín;A. Quintana;L. del Cano;A. Zaldívar

  • XMIPP: a new generation of an open-source image processing package for electron microscopy

    Carlos Óscar Sánchez Sorzano;Roberto Marabini;Javier Velázquez-Muriel;José Román Bilbao-Castro

  • Consistent and elastic registration of histological sections using vector-spline regularization

    Ignacio Arganda-Carreras;Carlos O. S. Sorzano;Roberto Marabini;José María Carazo

  • Image processing for electron microscopy single-particle analysis using XMIPP

    Sjors H. W. Scheres;Rafael Núñez-Ramírez;Carlos Óscar Sánchez Sorzano;José M. Carazo

  • Xmipp 3.0: an improved software suite for image processing in electron microscopy.

    J.M. de la Rosa-Trevín;J. Otón;R. Marabini;A. Zaldívar

  • Maximum-likelihood Multi-reference Refinement for Electron Microscopy Images

    Sjors H.W. Scheres;Mikel Valle;Rafael Nuñez;Carlos O.S. Sorzano;Carlos O.S. Sorzano

  • Xmipp: An Image Processing Package for Electron Microscopy

    R. Marabini;I.M. Masegosa;M.C. San Martı́n;S. Marco

  • A clustering approach to multireference alignment of single-particle projections in electron microscopy

    C.O.S. Sorzano;J.R. Bilbao-Castro;Y. Shkolnisky;M. Alcorlo

  • MonoRes: Automatic and Accurate Estimation of Local Resolution for Electron Microscopy Maps

    Jose Luis Vilas;Josué Gómez-Blanco;Pablo Conesa;Roberto Melero

  • 3D reconstruction in electron microscopy using ART with smooth spherically symmetric volume elements (blobs).

    Roberto Marabini;Gabor T Herman;José M Carazo

  • Automatic local resolution-based sharpening of cryo-EM maps.

    Erney Ramírez-Aportela;Jose Luis Vilas;Alisa Glukhova;Roberto Melero

  • Pattern recognition and classification of images of biological macromolecules using artificial neural networks

    R. Marabini;J.M. Carazo

  • The effect of overabundant projection directions on 3D reconstruction algorithms

    C. O. S. Sorzano;Roberto Marabini;Nicolas Boisset;Eicke Rietzel

  • MRC2014: Extensions to the MRC format header for electron cryo-microscopy and tomography.

    Anchi Cheng;Richard Henderson;David Mastronarde;Steven J. Ludtke

  • Three-Dimensional Reconstruction from Reduced Sets of Very Noisy Images Acquired Following a Single-Axis Tilt Schema: Application of a New Three-Dimensional Reconstruction Algorithm and Objective Comparison with Weighted Backprojection

    R. Marabini;E. Rietzel;R. Schroeder;G.T. Herman

  • A pattern matching approach to the automatic selection of particles from low-contrast electron micrographs

    V. Abrishami;A. Zaldívar-Peraza;J. M. de la Rosa-Trevín;J. Vargas

  • Alignment of direct detection device micrographs using a robust Optical Flow approach.

    Vahid Abrishami;Javier Vargas;Xueming Li;Yifan Cheng

  • Automatic particle selection from electron micrographs using machine learning techniques

    C.O.S. Sorzano;E. Recarte;M. Alcorlo;J.R. Bilbao-Castro

  • Image processing and 3-D reconstruction in electron microscopy

    J.-J. Fernandez;C.O.S. Sorzano;R. Marabini;J.-M. Carazo

  • Efficient initial volume determination from electron microscopy images of single particles

    Javier Vargas;Ana-Lucia Álvarez-Cabrera;Roberto Marabini;José María Carazo

  • Characterization of transfer function, resolution and depth of field of a soft X-ray microscope applied to tomography enhancement by Wiener deconvolution.

    Joaquín Otón;Eva Pereiro;Ana J. Pérez-Berná;Laia Millach

Frequent Co-Authors

José María Carazo
José María Carazo Spanish National Research Council
Carlos Oscar S. Sorzano
Carlos Oscar S. Sorzano Spanish National Research Council
José Luis Vilas
José Luis Vilas University of the Basque Country
Gabor T. Herman
Gabor T. Herman City University of New York
María Jesús Martínez
María Jesús Martínez Spanish National Research Council
José L. Carrascosa
José L. Carrascosa Spanish National Research Council
Joachim Frank
Joachim Frank Columbia University
Wah Chiu
Wah Chiu Stanford University
Jason S. McLellan
Jason S. McLellan The University of Texas at Austin
Ana Maria Cuervo
Ana Maria Cuervo Albert Einstein College of Medicine

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