Manimozhiyan Arumugam

Best Publications

• Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

  Evan Bolyen;Jai Ram Rideout;Matthew R. Dillon;Nicholas A. Bokulich

  21851
  Citations

• A human gut microbial gene catalogue established by metagenomic sequencing

  Junjie Qin;Ruiqiang Li;Jeroen Raes;Manimozhiyan Arumugam

  13472
  Citations

• Enterotypes of the human gut microbiome

  Manimozhiyan Arumugam;Jeroen Raes;Eric Pelletier;Denis Le Paslier

  8739
  Citations

• Richness of human gut microbiome correlates with metabolic markers

  Trine Nielsen;Junjie Qin;Edi Prifti

  5806
  Citations

• Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2.

  Evan Bolyen;Jai Ram Rideout;Matthew R. Dillon;Nicholas A. Bokulich

  4019
  Citations

• An integrated catalog of reference genes in the human gut microbiome

  Junhua Li;Huijue Jia;Xianghang Cai;Huanzi Zhong

  2275
  Citations

• Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota

  Kristoffer Forslund;Falk Hildebrand;Falk Hildebrand;Trine Nielsen;Gwen Falony;Gwen Falony

  2209
  Citations

• Human gut microbes impact host serum metabolome and insulin sensitivity

  Helle Krogh Pedersen;Valborg Gudmundsdottir;Henrik B. Nielsen;Tuulia Hyötyläinen;Tuulia Hyötyläinen

  2098
  Citations

• Gut microbiome development along the colorectal adenoma-carcinoma sequence.

  Qiang Feng;Suisha Liang;Huijue Jia;Andreas Stadlmayr

  1558
  Citations

• Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific for colorectal cancer

  Jakob Wirbel;Paul Theodor Pyl;Paul Theodor Pyl;Ece Kartal;Konrad Zych

  1283
  Citations

• Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes

  H Bjørn Nielsen;Mathieu Almeida;Agnieszka Sierakowska Juncker;Simon Rasmussen

  1258
  Citations

• Metagenomic analysis of faecal microbiome as a tool towards targeted non-invasive biomarkers for colorectal cancer

  Jun Yu;Qiang Feng;Sunny Hei Wong;Dongya Zhang

  1250
  Citations

• Enterotypes in the landscape of gut microbial community composition

  Paul I. Costea;Falk Hildebrand;Manimozhiyan Arumugam;Fredrik Bäckhed;Fredrik Bäckhed

  1133
  Citations

• Genomic variation landscape of the human gut microbiome

  Siegfried Schloissnig;Manimozhiyan Arumugam;Shinichi Sunagawa;Makedonka Mitreva

  1012
  Citations

• QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science

  Evan Bolyen;Jai Ram Rideout;Matthew R Dillon;Nicholas A Bokulich

  992
  Citations

• Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation

  Andrew Maltez Thomas;Andrew Maltez Thomas;Paolo Manghi;Francesco Asnicar;Edoardo Pasolli

  985
  Citations

• Recovery of gut microbiota of healthy adults following antibiotic exposure

  Albert Palleja;Kristian H Mikkelsen;Sofia K Forslund;Alireza Kashani

  833
  Citations

• Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications.

  Pelin Yilmaz;Pelin Yilmaz;Renzo Kottmann;Dawn Field;Rob Knight;Rob Knight

  810
  Citations

• The human small intestinal microbiota is driven by rapid uptake and conversion of simple carbohydrates

  Erwin G Zoetendal;Jeroen Raes;Bartholomeus van den Bogert;Manimozhiyan Arumugam

  757
  Citations

• Metagenomic species profiling using universal phylogenetic marker genes

  Shinichi Sunagawa;Daniel R Mende;Georg Zeller;Fernando Izquierdo-Carrasco

  556
  Citations