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Biology and Biochemistry

D-Index
65
Citations
18845
World Ranking
9026
National Ranking
4012

Overview

Joshua N. Adkins is a researcher affiliated with the Pacific Northwest National Laboratory in the United States. Their work spans several main fields including Physics and Astronomy as well as Earth and Planetary Sciences. Within these broad areas, their subfields of study include Oceanography, Astronomy and Astrophysics, Nuclear and High Energy Physics, Molecular Biology, and Physiology.

The topics most frequently explored by Joshua N. Adkins cover a diverse range of scientific areas such as Geophysics and Gravity Measurements, Ionosphere and Magnetosphere Dynamics, Astrophysics and Cosmic Phenomena, Adipose Tissue and Metabolism, Single-cell and Spatial Transcriptomics, Neonatal Respiratory Health Research, and Muscle Metabolism and Nutrition.

Joshua N. Adkins has contributed to multiple research publications, with notable recent papers including:

  • "Molecular Transducers of Physical Activity Consortium (MoTrPAC): Mapping the Dynamic Responses to Exercise" (2020) published in Cell
  • "Phage-specific metabolic reprogramming of virocells" (2020) published in The ISME Journal
  • "Temporal dynamics of the multi-omic response to endurance exercise training" (2024) published in Nature
  • "High-throughput and high-efficiency sample preparation for single-cell proteomics using a nested nanowell chip" (2021) published in Nature Communications
  • "A census of the lung: CellCards from LungMAP" (2021) published in Developmental Cell

Collaborations form a significant part of their research output, with frequent co-authors including Scott Baker, Terry Law, Sarah Leichty, and Haylie Kimball. These collaborations underscore a broad network of scientific cooperation within and across disciplines.

Joshua N. Adkins's scholarly work appears extensively in multiple publication venues. Key venues where they have published include:

  • OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)
  • bioRxiv (Cold Spring Harbor Laboratory)
  • Nature Communications
  • The ISME Journal
  • American Journal of Respiratory Cell and Molecular Biology

Best Publications

  • Toward a Human Blood Serum Proteome Analysis By Multidimensional Separation Coupled With Mass Spectrometry

    Joshua N. Adkins;Susan M. Varnum;Kenneth J. Auberry;Ronald J. Moore

  • The Human Plasma Proteome A Nonredundant List Developed by Combination of Four Separate Sources

    N. Leigh Anderson;Malu Polanski;Rembert Pieper;Tina Gatlin

  • Overview of the HUPO Plasma Proteome Project: results from the pilot phase with 35 collaborating laboratories and multiple analytical groups, generating a core dataset of 3020 proteins and a publicly-available database.

    Gilbert S. Omenn;David J. States;Marcin Adamski;Thomas W. Blackwell

  • Omic data from evolved E. coli are consistent with computed optimal growth from genome‐scale models

    Nathan E Lewis;Kim K Hixson;Tom M Conrad;Joshua A Lerman

  • Activated ClpP kills persisters and eradicates a chronic biofilm infection

    Brian P. Conlon;Ernesto S. Nakayasu;Ernesto S. Nakayasu;Laura E. Fleck;Michael D. LaFleur

  • Persister formation in Staphylococcus aureus is associated with ATP depletion.

    Brian P. Conlon;Sarah E. Rowe;Autumn Brown Gandt;Austin S. Nuxoll

  • Normalization Approaches for Removing Systematic Biases Associated with Mass Spectrometry and Label-Free Proteomics

    Stephen J. Callister;Richard C. Barry;Joshua N. Adkins;Ethan T. Johnson

  • DAnTE: a statistical tool for quantitative analysis of -omics data

    Ashoka D. Polpitiya;Wei-Jun Qian;Navdeep Jaitly;Vladislav A. Petyuk

  • An evaluation, comparison, and accurate benchmarking of several publicly available MS/MS search algorithms: sensitivity and specificity analysis.

    Eugene A. Kapp;Frédéric Schütz;Lisa M. Connolly;John A. Chakel

  • Utilizing Human Blood Plasma for Proteomic Biomarker Discovery

    Jon M. Jacobs;Joshua N. Adkins;Wei Jun Qian;Tao Liu

  • Distance restraints from crosslinking mass spectrometry: Mining a molecular dynamics simulation database to evaluate lysine–lysine distances

    Eric D. Merkley;Steven Rysavy;Abdullah Kahraman;Ryan P. Hafen

  • In silico method for modelling metabolism and gene product expression at genome scale

    Joshua A. Lerman;Daniel R. Hyduke;Haythem Latif;Vasiliy A. Portnoy

  • Decon2LS: An open-source software package for automated processing and visualization of high resolution mass spectrometry data

    Navdeep Jaitly;Anoop M. Mayampurath;Kyle A. Littlefield;Joshua N. Adkins

  • Molecular Transducers of Physical Activity Consortium (MoTrPAC): Mapping the Dynamic Responses to Exercise.

    James A. Sanford;Christopher D. Nogiec;Malene E. Lindholm;Joshua N. Adkins

  • Whole proteome analysis of post-translational modifications: Applications of mass-spectrometry for proteogenomic annotation

    Nitin Gupta;Stephen Tanner;Navdeep Jaitly;Joshua N. Adkins

  • VIPER: an advanced software package to support high-throughput LC-MS peptide identification

    Matthew E. Monroe;Nikola Tolić;Navdeep Jaitly;Jason L. Shaw

  • Brief Communication: MASIC: A software program for fast quantitation and flexible visualization of chromatographic profiles from detected LC-MS(/MS) features

    Matthew E. Monroe;Jason L. Shaw;Don S. Daly;Joshua N. Adkins

  • Improved peptide elution time prediction for reversed-phase liquid chromatography-MS by incorporating peptide sequence information

    Konstantinos Petritis;Lars J. Kangas;Bo Yan;Matthew E. Monroe

  • Proteomic analysis of Salmonella enterica serovar typhimurium isolated from RAW 264.7 macrophages: identification of a novel protein that contributes to the replication of serovar typhimurium inside macrophages.

    Liang Shi;Joshua N. Adkins;James R. Coleman;Athena A. Schepmoes

  • A statistical framework for protein quantitation in bottom-up MS-based proteomics

    Yuliya Karpievitch;Jeff Stanley;Thomas Taverner;Jianhua Huang

Frequent Co-Authors

Richard D. Smith
Richard D. Smith Pacific Northwest National Laboratory
Matthew E. Monroe
Matthew E. Monroe Pacific Northwest National Laboratory
Fred Heffron
Fred Heffron Oregon Health & Science University
Samuel O. Purvine
Samuel O. Purvine Environmental Molecular Sciences Laboratory
Ernesto S. Nakayasu
Ernesto S. Nakayasu Pacific Northwest National Laboratory
Ronald J. Moore
Ronald J. Moore Pacific Northwest National Laboratory
David G. Camp
David G. Camp Pacific Northwest National Laboratory
Thomas O. Metz
Thomas O. Metz Pacific Northwest National Laboratory
Navdeep Jaitly
Navdeep Jaitly Google (United States)
Wei-Jun Qian
Wei-Jun Qian Pacific Northwest National Laboratory

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