Jennifer L. Reed

Overview

Best Publications

• A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information.

  Adam M Feist;Christopher S Henry;Jennifer L Reed;Markus Krummenacker

  1782
  Citations

• An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR)

  Jennifer L Reed;Thuy D Vo;Christophe H Schilling;Bernhard O Palsson

  1319
  Citations

• Genome-scale models of microbial cells: evaluating the consequences of constraints

  Nathan D. Price;Jennifer L. Reed;Bernhard Ø. Palsson

  1273
  Citations

• Towards environmental systems biology of Shewanella

  James K. Fredrickson;Margaret F. Romine;Alexander S. Beliaev;Jennifer M. Auchtung

  1109
  Citations

• Integrating high-throughput and computational data elucidates bacterial networks

  Markus W. Covert;Eric M. Knight;Jennifer L. Reed;Markus J. Herrgard

  1022
  Citations

• Amyloid Fibril Formation by Aβ16-22, a Seven-Residue Fragment of the Alzheimer's β-Amyloid Peptide, and Structural Characterization by Solid State NMR†

  John J. Balbach;Yoshitaka Ishii;Oleg N. Antzutkin;Richard D. Leapman

  887
  Citations

• Multiple quantum solid-state NMR indicates a parallel, not antiparallel, organization of β-sheets in Alzheimer's β-amyloid fibrils

  Oleg N. Antzutkin;John J. Balbach;Richard D. Leapman;Nancy W. Rizzo

  509
  Citations

• Towards multidimensional genome annotation

  Jennifer L. Reed;Iman Famili;Ines Thiele;Bernhard O. Palsson

  453
  Citations

• Thirteen Years of Building Constraint-Based In Silico Models of Escherichia coli

  Jennifer L. Reed;Bernhard Ø. Palsson

  441
  Citations

• Systems approach to refining genome annotation.

  Jennifer L. Reed;Trina R. Patel;Keri H. Chen;Andrew R. Joyce

  379
  Citations

• Experimental and computational assessment of conditionally essential genes in Escherichia coli.

  Andrew R. Joyce;Jennifer L. Reed;Aprilfawn White;Robert Edwards

  326
  Citations

• Genome-Scale In Silico Models of E. coli Have Multiple Equivalent Phenotypic States: Assessment of Correlated Reaction Subsets That Comprise Network States

  Jennifer L. Reed;Bernhard Ø. Palsson

  313
  Citations

• OptORF: Optimal metabolic and regulatory perturbations for metabolic engineering of microbial strains

  Joonhoon Kim;Joonhoon Kim;Jennifer L Reed;Jennifer L Reed

  278
  Citations

• Hierarchical thinking in network biology: the unbiased modularization of biochemical networks

  Jason A. Papin;Jennifer L. Reed;Bernhard O. Palsson

  247
  Citations

• Constraint-based analysis of metabolic capacity of Salmonella typhimurium during host-pathogen interaction

  Anu Raghunathan;Jennifer L. Reed;Sook-Il Shin;Bernhard Ø. Palsson

  214
  Citations

• Transcriptional patterns in both host and bacterium underlie a daily rhythm of anatomical and metabolic change in a beneficial symbiosis

  Andrew M. Wier;Andrew M. Wier;Spencer V. Nyholm;Mark J. Mandel;Mark J. Mandel;R. Prisca Massengo-Tiassé

  188
  Citations

• A community effort towards a knowledge-base and mathematical model of the human pathogen Salmonella Typhimurium LT2

  Ines Thiele;Daniel R Hyduke;Benjamin Steeb;Guy Fankam

  180
  Citations

• Synergy between 13C-metabolic flux analysis and flux balance analysis for understanding metabolic adaption to anaerobiosis in E. coli

  Xuewen Chen;Ana P. Alonso;Doug K. Allen;Jennifer L. Reed

  164
  Citations

• Constraint-Based Model of Shewanella oneidensis MR-1 Metabolism: A Tool for Data Analysis and Hypothesis Generation

  Grigoriy E. Pinchuk;Eric A. Hill;Oleg V. Geydebrekht;Jessica De Ingeniis

  154
  Citations

• Pyruvate and Lactate Metabolism by Shewanella oneidensis MR-1 under Fermentation, Oxygen Limitation, and Fumarate Respiration Conditions

  Grigoriy E. Pinchuk;Oleg V. Geydebrekht;Eric A. Hill;Jennifer L. Reed

  153
  Citations