Georgios A. Pavlopoulos

Best Publications

• Using graph theory to analyze biological networks

  Georgios A Pavlopoulos;Georgios A Pavlopoulos;Maria Secrier;Charalampos N Moschopoulos;Charalampos N Moschopoulos;Theodoros G Soldatos

  921
  Citations

• Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection

  Rekha Seshadri;Sinead C Leahy;Graeme T Attwood;Koon Hoong Teh

  645
  Citations

• Protein structure determination using metagenome sequence data.

  Sergey Ovchinnikov;Hahnbeom Park;Neha Varghese;Po-Ssu Huang

  542
  Citations

• Metagenomics: Tools and Insights for Analyzing Next-Generation Sequencing Data Derived from Biodiversity Studies

  Anastasis Oulas;Christina Pavloudi;Paraskevi Polymenakou;Georgios A. Pavlopoulos

  474
  Citations

• 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life

  Supratim Mukherjee;Rekha Seshadri;Neha J. Varghese;Emiley A. Eloe-Fadrosh

  290
  Citations

• A survey of visualization tools for biological network analysis

  Georgios A Pavlopoulos;Anna-Lynn Wegener;Reinhard Schneider

  262
  Citations

• A Guide to Conquer the Biological Network Era Using Graph Theory.

  Unknown

  254
  Citations

• Large-Scale Analyses of Human Microbiomes Reveal Thousands of Small, Novel Genes.

  Hila Sberro;Brayon J. Fremin;Soumaya Zlitni;Fredrik Edfors

  241
  Citations

• IMG/VR: a database of cultured and uncultured DNA Viruses and retroviruses.

  David Paez-Espino;I. Min A. Chen;Krishna Palaniappan;Anna Ratner

  212
  Citations

• Bipartite graphs in systems biology and medicine: a survey of methods and applications.

  Unknown

  181
  Citations

• HipMCL: a high-performance parallel implementation of the Markov clustering algorithm for large-scale networks.

  Ariful Azad;Georgios A Pavlopoulos;Christos A Ouzounis;Nikos C Kyrpides

  162
  Citations

• Arena3D: visualization of biological networks in 3D.

  Georgios A Pavlopoulos;Seán I O'Donoghue;Venkata P Satagopam;Theodoros G Soldatos

  140
  Citations

• Nontargeted virus sequence discovery pipeline and virus clustering for metagenomic data.

  David Paez-Espino;Georgios A Pavlopoulos;Natalia N Ivanova;Nikos C Kyrpides

  122
  Citations

• Visualizing genome and systems biology: technologies, tools, implementation techniques and trends, past, present and future

  Georgios A. Pavlopoulos;Dimitris Malliarakis;Nikolas Papanikolaou;Theodosis Theodosiou

  120
  Citations

• A reference guide for tree analysis and visualization

  Georgios A Pavlopoulos;Theodoros G Soldatos;Adriano Barbosa-Silva;Reinhard Schneider

  119
  Citations

• Protein–protein interaction predictions using text mining methods

  Unknown

  109
  Citations

• Global BioID-based SARS-CoV-2 proteins proximal interactome unveils novel ties between viral polypeptides and host factors involved in multiple COVID19-associated mechanisms

  Estelle M.N. Laurent;Yorgos Sofianatos;Anastassia Komarova;Jean-Pascal Gimeno

  94
  Citations

• Unraveling genomic variation from next generation sequencing data

  Georgios A Pavlopoulos;Anastasis Oulas;Ernesto Iacucci;Alejandro Sifrim

  89
  Citations

• Medusa: A tool for exploring and clustering biological networks

  Georgios A Pavlopoulos;Georgios A Pavlopoulos;Sean D Hooper;Alejandro Sifrim;Reinhard Schneider;Reinhard Schneider

  65
  Citations

• Empirical Comparison of Visualization Tools for Larger-Scale Network Analysis

  Georgios A Pavlopoulos;David Paez-Espino;Nikos C Kyrpides;Ioannis Iliopoulos

  51
  Citations