World's Best Scientists 2026 revealed!
Francesco Asnicar

Francesco Asnicar

D-Index & Metrics

Microbiology

D-Index
45
Citations
45749
World Ranking
4943
National Ranking
164

Best Publications

  • Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

    Evan Bolyen;Jai Ram Rideout;Matthew R. Dillon;Nicholas A. Bokulich

  • Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2.

    Evan Bolyen;Jai Ram Rideout;Matthew R. Dillon;Nicholas A. Bokulich

  • Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with biobakery 3

    Francesco Beghini;Lauren J McIver;Aitor Blanco-Míguez;Leonard Dubois

  • Extensive Unexplored Human Microbiome Diversity Revealed by Over 150,000 Genomes from Metagenomes Spanning Age, Geography, and Lifestyle.

    Edoardo Pasolli;Francesco Asnicar;Serena Manara;Moreno Zolfo

  • Extending and improving metagenomic taxonomic profiling with uncharacterized species using MetaPhlAn 4

    Unknown

  • Mother-to-Infant Microbial Transmission from Different Body Sites Shapes the Developing Infant Gut Microbiome.

    Pamela Ferretti;Edoardo Pasolli;Adrian Tett;Francesco Asnicar

  • QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science

    Evan Bolyen;Jai Ram Rideout;Matthew R Dillon;Nicholas A Bokulich

  • Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation

    Andrew Maltez Thomas;Andrew Maltez Thomas;Paolo Manghi;Francesco Asnicar;Edoardo Pasolli

  • Microbiome connections with host metabolism and habitual diet from 1,098 deeply phenotyped individuals.

    Francesco Asnicar;Sarah E. Berry;Ana M. Valdes;Ana M. Valdes;Long H. Nguyen

  • Compact graphical representation of phylogenetic data and metadata with GraPhlAn

    Francesco Asnicar;George Weingart;Timothy L. Tickle;Curtis Huttenhower

  • Precise phylogenetic analysis of microbial isolates and genomes from metagenomes using PhyloPhlAn 3.0.

    Francesco Asnicar;Andrew Maltez Thomas;Francesco Beghini;Claudia Mengoni

  • Cross-cohort gut microbiome associations with immune checkpoint inhibitor response in advanced melanoma

    Unknown

  • The person-to-person transmission landscape of the gut and oral microbiomes

    Unknown

  • Gut vascular barrier impairment leads to intestinal bacteria dissemination and colorectal cancer metastasis to liver

    Alice Bertocchi;Sara Carloni;Paola Simona Ravenda;Giovanni Bertalot

  • Endogenous murine microbiota member Faecalibaculum rodentium and its human homologue protect from intestinal tumour growth.

    Elena Zagato;Elena Zagato;Chiara Pozzi;Alice Bertocchi;Tiziana Schioppa

  • Strain-Level Analysis of Mother-to-Child Bacterial Transmission during the First Few Months of Life

    Moran Yassour;Moran Yassour;Moran Yassour;Eeva Jason;Larson J. Hogstrom;Timothy D. Arthur

  • The Prevotella copri Complex Comprises Four Distinct Clades Underrepresented in Westernized Populations

    Adrian Tett;Kun D. Huang;Francesco Asnicar;Hannah Fehlner-Peach

  • Studying Vertical Microbiome Transmission from Mothers to Infants by Strain-Level Metagenomic Profiling

    Francesco Asnicar;Serena Manara;Moreno Zolfo;Duy Tin Truong

  • Strain-level microbial epidemiology and population genomics from shotgun metagenomics

    Matthias Scholz;Doyle V Ward;Edoardo Pasolli;Thomas Tolio

  • Phylogenomics of 10,575 genomes reveals evolutionary proximity between domains Bacteria and Archaea.

    Qiyun Zhu;Uyen Mai;Wayne Pfeiffer;Stefan Janssen;Stefan Janssen

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