Francesco Asnicar

Best Publications

• Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

  Evan Bolyen;Jai Ram Rideout;Matthew R. Dillon;Nicholas A. Bokulich

  21851
  Citations

• Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2.

  Evan Bolyen;Jai Ram Rideout;Matthew R. Dillon;Nicholas A. Bokulich

  4019
  Citations

• Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with biobakery 3

  Francesco Beghini;Lauren J McIver;Aitor Blanco-Míguez;Leonard Dubois

  2085
  Citations

• Extensive Unexplored Human Microbiome Diversity Revealed by Over 150,000 Genomes from Metagenomes Spanning Age, Geography, and Lifestyle.

  Edoardo Pasolli;Francesco Asnicar;Serena Manara;Moreno Zolfo

  1596
  Citations

• Extending and improving metagenomic taxonomic profiling with uncharacterized species using MetaPhlAn 4

  Unknown

  1322
  Citations

• Mother-to-Infant Microbial Transmission from Different Body Sites Shapes the Developing Infant Gut Microbiome.

  Pamela Ferretti;Edoardo Pasolli;Adrian Tett;Francesco Asnicar

  1273
  Citations

• QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science

  Evan Bolyen;Jai Ram Rideout;Matthew R Dillon;Nicholas A Bokulich

  992
  Citations

• Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation

  Andrew Maltez Thomas;Andrew Maltez Thomas;Paolo Manghi;Francesco Asnicar;Edoardo Pasolli

  985
  Citations

• Microbiome connections with host metabolism and habitual diet from 1,098 deeply phenotyped individuals.

  Francesco Asnicar;Sarah E. Berry;Ana M. Valdes;Ana M. Valdes;Long H. Nguyen

  934
  Citations

• Compact graphical representation of phylogenetic data and metadata with GraPhlAn

  Francesco Asnicar;George Weingart;Timothy L. Tickle;Curtis Huttenhower

  842
  Citations

• Precise phylogenetic analysis of microbial isolates and genomes from metagenomes using PhyloPhlAn 3.0.

  Francesco Asnicar;Andrew Maltez Thomas;Francesco Beghini;Claudia Mengoni

  816
  Citations

• Cross-cohort gut microbiome associations with immune checkpoint inhibitor response in advanced melanoma

  Unknown

  550
  Citations

• The person-to-person transmission landscape of the gut and oral microbiomes

  Unknown

  515
  Citations

• Gut vascular barrier impairment leads to intestinal bacteria dissemination and colorectal cancer metastasis to liver

  Alice Bertocchi;Sara Carloni;Paola Simona Ravenda;Giovanni Bertalot

  467
  Citations

• Endogenous murine microbiota member Faecalibaculum rodentium and its human homologue protect from intestinal tumour growth.

  Elena Zagato;Elena Zagato;Chiara Pozzi;Alice Bertocchi;Tiziana Schioppa

  466
  Citations

• Strain-Level Analysis of Mother-to-Child Bacterial Transmission during the First Few Months of Life

  Moran Yassour;Moran Yassour;Moran Yassour;Eeva Jason;Larson J. Hogstrom;Timothy D. Arthur

  458
  Citations

• The Prevotella copri Complex Comprises Four Distinct Clades Underrepresented in Westernized Populations

  Adrian Tett;Kun D. Huang;Francesco Asnicar;Hannah Fehlner-Peach

  448
  Citations

• Studying Vertical Microbiome Transmission from Mothers to Infants by Strain-Level Metagenomic Profiling

  Francesco Asnicar;Serena Manara;Moreno Zolfo;Duy Tin Truong

  415
  Citations

• Strain-level microbial epidemiology and population genomics from shotgun metagenomics

  Matthias Scholz;Doyle V Ward;Edoardo Pasolli;Thomas Tolio

  400
  Citations

• Phylogenomics of 10,575 genomes reveals evolutionary proximity between domains Bacteria and Archaea.

  Qiyun Zhu;Uyen Mai;Wayne Pfeiffer;Stefan Janssen;Stefan Janssen

  380
  Citations