D-Index & Metrics Best Publications

D-Index & Metrics D-index (Discipline H-index) only includes papers and citation values for an examined discipline in contrast to General H-index which accounts for publications across all disciplines.

Discipline name D-index D-index (Discipline H-index) only includes papers and citation values for an examined discipline in contrast to General H-index which accounts for publications across all disciplines. Citations Publications World Ranking National Ranking
Genetics D-index 62 Citations 101,271 114 World Ranking 2109 National Ranking 945

Research.com Recognitions

Awards & Achievements

2015 - Fellow of Alfred P. Sloan Foundation

Best Publications

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

Ben Langmead;Cole Trapnell;Mihai Pop;Steven L Salzberg.
Genome Biology (2009)

20983 Citations

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

Cole Trapnell;Cole Trapnell;Brian A Williams;Geo Pertea;Ali Mortazavi.
Nature Biotechnology (2010)

13690 Citations

TopHat: discovering splice junctions with RNA-Seq

Cole Trapnell;Lior Pachter;Steven L. Salzberg.
Bioinformatics (2009)

12478 Citations

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

Daehwan Kim;Daehwan Kim;Geo Pertea;Cole Trapnell;Cole Trapnell;Harold Pimentel.
Genome Biology (2013)

11830 Citations

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

Cole Trapnell;Adam Roberts;Loyal Goff;Loyal Goff;Loyal Goff;Geo Pertea.
Nature Protocols (2012)

11442 Citations

The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells

Cole Trapnell;Davide Cacchiarelli;Davide Cacchiarelli;Jonna L Grimsby;Prapti Pokharel.
Nature Biotechnology (2014)

3433 Citations

Differential analysis of gene regulation at transcript resolution with RNA-seq

Cole Trapnell;David G Hendrickson;David G Hendrickson;Martin Sauvageau;Martin Sauvageau;Loyal Goff;Loyal Goff.
Nature Biotechnology (2013)

3413 Citations

Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses

Moran N. Cabili;Cole Trapnell;Cole Trapnell;Loyal Goff;Magdalena J. Koziol;Magdalena J. Koziol.
Genes & Development (2011)

3363 Citations

Reversed graph embedding resolves complex single-cell trajectories.

Xiaojie Qiu;Qi Mao;Ying Tang;Li Wang.
Nature Methods (2017)

1746 Citations

The single-cell transcriptional landscape of mammalian organogenesis

Junyue Cao;Malte Spielmann;Xiaojie Qiu;Xingfan Huang.
Nature (2019)

1315 Citations

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Best Scientists Citing Cole Trapnell

Aviv Regev

Aviv Regev

Broad Institute

Publications: 195

John L. Rinn

John L. Rinn

University of Colorado Boulder

Publications: 156

Zhangjun Fei

Zhangjun Fei

Cornell University

Publications: 137

Sarah A. Teichmann

Sarah A. Teichmann

Wellcome Sanger Institute

Publications: 128

John C. Marioni

John C. Marioni

European Bioinformatics Institute

Publications: 125

Bing Ren

Bing Ren

University of California, San Diego

Publications: 115

Yutaka Suzuki

Yutaka Suzuki

University of Tokyo

Publications: 112

Howard Y. Chang

Howard Y. Chang

Stanford University

Publications: 108

Blake C. Meyers

Blake C. Meyers

Donald Danforth Plant Science Center

Publications: 103

James A. Thomson

James A. Thomson

Morgridge Institute for Research

Publications: 97

Chuan He

Chuan He

University of Chicago

Publications: 97

Michael Snyder

Michael Snyder

Stanford University

Publications: 93

Alexander Meissner

Alexander Meissner

Max Planck Institute for Molecular Genetics

Publications: 87

Jay Shendure

Jay Shendure

University of Washington

Publications: 84

C. Robin Buell

C. Robin Buell

University of Georgia

Publications: 80

Fuchou Tang

Fuchou Tang

Peking University

Publications: 79

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Utrecht University

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University of Oregon

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Seoul National University

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Eduard Cesari

University of the Balearic Islands

Jerry M. Adams

Jerry M. Adams

Walter and Eliza Hall Institute of Medical Research

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Pamela L. Zeitlin

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Kirk C. Hansen

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Scott L. Painter

Oak Ridge National Laboratory

Paul J. Fletcher

Paul J. Fletcher

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