Björn Usadel

Overview

Best Publications

• Trimmomatic: a flexible trimmer for Illumina sequence data

  Anthony M. Bolger;Marc Lohse;Bjoern Usadel

  53974
  Citations

• [email protected]: the Golm Metabolome Database

  Joachim Kopka;Nicolas Schauer;Stephan Krueger;Claudia Birkemeyer

  1503
  Citations

• RobiNA: a user-friendly, integrated software solution for RNA-Seq-based transcriptomics

  Marc Lohse;Anthony M. Bolger;Axel Nagel;Alisdair R. Fernie

  896
  Citations

• Sugars and Circadian Regulation Make Major Contributions to the Global Regulation of Diurnal Gene Expression in Arabidopsis

  Oliver E. Bläsing;Yves Gibon;Manuela Günther;Melanie Höhne

  852
  Citations

• Extension of the Visualization Tool MapMan to Allow Statistical Analysis of Arrays, Display of Coresponding Genes, and Comparison with Known Responses

  Björn Usadel;Axel Nagel;Oliver Thimm;Henning Redestig

  704
  Citations

• Genome-wide reprogramming of metabolism and regulatory networks of Arabidopsis in response to phosphorus

  Rosa Morcuende;Rajendra Bari;Yves Gibon;Wenming Zheng

  625
  Citations

• A guide to using MapMan to visualize and compare Omics data in plants: a case study in the crop species, Maize

  Björn Usadel;Fabien Poree;Axel Nagel;Marc Lohse

  594
  Citations

• Starch as a major integrator in the regulation of plant growth.

  Ronan Sulpice;Eva-Theresa Pyl;Hirofumi Ishihara;Sandra Trenkamp

  593
  Citations

• Mercator: a fast and simple web server for genome scale functional annotation of plant sequence data

  Marc Lohse;Axel Nagel;Thomas Herter;Patrick May

  576
  Citations

• Co-expression tools for plant biology: opportunities for hypothesis generation and caveats

  Bjoern Usadel;Takeshi Obayashi;Marek Mutwil;Federico M Giorgi

  553
  Citations

• The genome of the stress-tolerant wild tomato species Solanum pennellii

  Anthony Bolger;Federico Scossa;Marie E Bolger;Christa Lanz

  526
  Citations

• MapMan4: A Refined Protein Classification and Annotation Framework Applicable to Multi-Omics Data Analysis.

  Rainer Schwacke;Gabriel Y. Ponce-Soto;Kirsten Krause;Anthony M. Bolger

  505
  Citations

• Integrated Analysis of Metabolite and Transcript Levels Reveals the Metabolic Shifts That Underlie Tomato Fruit Development and Highlight Regulatory Aspects of Metabolic Network Behavior

  Fernando Carrari;Charles Baxter;Björn Usadel;Ewa Urbanczyk-Wochniak

  464
  Citations

• Systems Biology of Tomato Fruit Development: Combined Transcript, Protein, and Metabolite Analysis of Tomato Transcription Factor (nor, rin) and Ethylene Receptor (Nr) Mutants Reveals Novel Regulatory Interactions

  Sonia Osorio;Rob Alba;Cynthia M.B. Damasceno;Gloria Lopez-Casado

  439
  Citations

• Comparative transcriptomics reveals patterns of selection in domesticated and wild tomato

  Daniel Koenig;José M. Jiménez-Gómez;Seisuke Kimura;Daniel Fulop

  430
  Citations

• Reprogramming a maize plant: transcriptional and metabolic changes induced by the fungal biotroph Ustilago maydis.

  Gunther Doehlemann;Ramon Wahl;Robin J. Horst;Lars M. Voll

  414
  Citations

• Quantitation in Mass-Spectrometry-Based Proteomics

  Waltraud X Schulze;Björn Usadel

  392
  Citations

• PageMan: an interactive ontology tool to generate, display, and annotate overview graphs for profiling experiments.

  Björn Usadel;Axel Nagel;Dirk Steinhauser;Yves Gibon

  378
  Citations

• Global Transcript Levels Respond to Small Changes of the Carbon Status during Progressive Exhaustion of Carbohydrates in Arabidopsis Rosettes

  Björn Usadel;Oliver E. Bläsing;Yves Gibon;Kristin Retzlaff

  376
  Citations

• Arabidopsis and primary photosynthetic metabolism – more than the icing on the cake

  Mark Stitt;John Lunn;Björn Usadel

  374
  Citations