2026 Srinivas Aluru: Computer Science Researcher – H-Index, Publications & Awards

Discipline name	D-Index	World Ranking	Current World Ranking	National Ranking	Current National Ranking	Publications	Citations
Computer Science	40	9029	8774	3836	3682	275	15241

Research.com Recognitions

2020 - ACM Fellow For contributions to parallel methods in computational biology and leadership in data science
2020 - SIAM Fellow For contributions to sequential and parallel discrete algorithms in computational genomics, and leadership in data science and engineering.
2017 - ACM Distinguished Member
2010 - IEEE Fellow For contributions to computational biology
2010 - Fellow of the American Association for the Advancement of Science (AAAS)

Overview

Srinivas Aluru is affiliated with the Georgia Institute of Technology in the United States. Their research primarily spans the field of Biochemistry, Genetics and Molecular Biology with a focus on Molecular Biology, Artificial Intelligence, Genetics, Computational Mathematics, and Cancer Research as subfields.

Their work covers several main topics including:

Genomics and Phylogenetic Studies
Single-cell and spatial transcriptomics
Algorithms and Data Compression
Gene expression and cancer classification
Gene Regulatory Network Analysis
DNA and Biological Computing
Bioinformatics and Genomic Networks

Srinivas Aluru has published research in frequent venues such as:

Bioinformatics
Journal of Computational Biology
bioRxiv (Cold Spring Harbor Laboratory)
Zenodo (CERN European Organization for Nuclear Research)
arXiv (Cornell University)

Recent notable papers include:

Fast alignment and preprocessing of chromatin profiles with Chromap, 2021, Nature Communications
A comprehensive evaluation of long read error correction methods, 2020, BMC Genomics
Real-time mapping of nanopore raw signals, 2021, Bioinformatics
Reply to: "Re-evaluating the evidence for a universal genetic boundary among microbial species", 2021, Nature Communications
On the Complexity of Sequence-to-Graph Alignment, 2020, Journal of Computational Biology

Collaborators frequently working with Srinivas Aluru include:

Sriram P. Chockalingam
Maneesha Aluru
Haowen Zhang
Harsh Shrivastava
Sharma V. Thankachan

Srinivas Aluru has received several distinctions, including:

SIAM Fellow (2020) for contributions to sequential and parallel discrete algorithms in computational genomics, and leadership in data science and engineering
ACM Fellow (2020) for contributions to parallel methods in computational biology and leadership in data science
ACM Distinguished Member (2017)
IEEE Fellow (2010) for contributions to computational biology
Fellow of the American Association for the Advancement of Science (AAAS) (2010)

Best Publications

Efficient Architecture-Aware Acceleration of BWA-MEM for Multicore Systems

Vasimuddin;Sanchit Misra;Heng Li;Srinivas Aluru

2643
Citations
A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana.

Xiaofei Yu;Lei Li;Jaroslaw Zola;Maneesha Aluru

733
Citations
Space efficient linear time construction of suffix arrays

Pang Ko;Srinivas Aluru

621
Citations
PCAP: a whole-genome assembly program.

Xiaoqiu Huang;Jianmin Wang;Srinivas Aluru;Shiaw-Pyng Yang

409
Citations
A survey of error-correction methods for next-generation sequencing.

Xiao Yang;Sriram P. Chockalingam;Srinivas Aluru

328
Citations
RD26 mediates crosstalk between drought and brassinosteroid signalling pathways

Huaxun Ye;Sanzhen Liu;Buyun Tang;Jiani Chen

276
Citations
Handbook Of Computational Molecular Biology

Srinivas Aluru

248
Citations
Reptile: representative tiling for short read error correction

Xiao Yang;Karin S. Dorman;Srinivas Aluru

195
Citations
Fast alignment and preprocessing of chromatin profiles with Chromap.

Haowen Zhang;Li Song;Xiaotao Wang;Haoyu Cheng

194
Citations
A fast adaptive algorithm for computing whole-genome homology maps.

Chirag Jain;Chirag Jain;Sergey Koren;Alexander T. Dilthey;Adam M. Phillippy

179
Citations
Large-scale maximum likelihood-based phylogenetic analysis on the IBM BlueGene/L

Michael Ott;Jaroslaw Zola;Alexandros Stamatakis;Srinivas Aluru

162
Citations
Parallel biological sequence comparison using prefix computations

Srinivas Aluru;Natsuhiko Futamura;Kishan Mehrotra

149
Citations
A Fast Approximate Algorithm for Mapping Long Reads to Large Reference Databases

Chirag Jain;Alexander T. Dilthey;Sergey Koren;Srinivas Aluru

139
Citations
A comprehensive evaluation of long read error correction methods

Haowen Zhang;Chirag Jain;Srinivas Aluru

135
Citations
Space and time optimal parallel sequence alignments

S. Rajko;S. Aluru

125
Citations
Efficient clustering of large EST data sets on parallel computers.

Anantharaman Kalyanaraman;Srinivas Aluru;Suresh Kothari;Volker Brendel

119
Citations
Parallel domain decomposition and load balancing using space-filling curves

S. Aluru;F.E. Sevilgen

116
Citations
Finding Motifs in Biological Sequences Using the Micron Automata Processor

Indranil Roy;Srinivas Aluru

92
Citations
A Review of Hardware Acceleration for Computational Genomics

Srinivas Aluru;Nagakishore Jammula

87
Citations
Real-time mapping of nanopore raw signals.

Haowen Zhang;Haoran Li;Chirag Jain;Haoyu Cheng;Haoyu Cheng

84
Citations
Scientific Computing with Multicore and Accelerators

A. Sarje;J. Zola;S. Aluru

1
Citations

Frequent Co-Authors

Patrick S. Schnable Iowa State University

David A. Bader New Jersey Institute of Technology

Adam M. Phillippy National Institutes of Health

Sergey Koren National Institutes of Health

Heng Li Harvard University

Sanjay Ranka University of Florida

Bertil Schmidt Johannes Gutenberg University of Mainz

Konstantinos T. Konstantinidis Georgia Institute of Technology

Le Song Mohamed bin Zayed University of Artificial Intelligence

Yanhai Yin Iowa State University

External Links

Wikipedia of Srinivas Aluru Personal website of Srinivas Aluru Google Scholar page

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