World's Best Scientists 2026 revealed!

D-Index & Metrics

Computer Science

D-Index
50
Citations
9191
World Ranking
5649
National Ranking
2571

Research.com Recognitions

  • 1977 - Fellow of the American Association for the Advancement of Science (AAAS)

Overview

K. Bretonnel Cohen is affiliated with the University of Colorado Denver in the United States. Their research primarily spans the field of Biochemistry, Genetics and Molecular Biology, with significant contributions to Molecular Biology, Artificial Intelligence, Genetics, Biomedical Engineering, and Sociology and Political Science.

The scientist has contributed to several topics, including:

  • Bioinformatics and Genomic Networks
  • Genomics and Rare Diseases
  • Biomedical Text Mining and Ontologies
  • Biomedical and Engineering Education
  • Genetics, Bioinformatics, and Biomedical Research
  • Topic Modeling
  • Misinformation and Its Impacts

Recent publications by K. Bretonnel Cohen include:

  • Natural Language Processing for Rapid Response to Emergent Diseases: Case Study of Calcium Channel Blockers and Hypertension in the COVID-19 Pandemic, 2020, Journal of Medical Internet Research
  • A Machine Learning Approach to Identifying Changes in Suicidal Language, 2020, Suicide and Life-Threatening Behavior
  • High-quality gene/disease embedding in a multi-relational heterogeneous graph after a joint matrix/tensor decomposition, 2022, Journal of Biomedical Informatics
  • Bridging heterogeneous mutation data to enhance disease gene discovery, 2021, Briefings in Bioinformatics
  • BioHackathon 2015: Semantics of data for life sciences and reproducible research, 2020, F1000Research

Their frequent coauthors include Jin-Dong Kim, Kaiyin Zhou, Yuxing Wang, Jingbo Xia, and Xiaohang Ma.

K. Bretonnel Cohen has published multiple works in venues such as:

  • Genomics & Informatics
  • Journal of Medical Internet Research
  • Suicide and Life-Threatening Behavior
  • Journal of Biomedical Informatics
  • Briefings in Bioinformatics

The scientist was recognized as a Fellow of the American Association for the Advancement of Science (AAAS) in 1977.

Best Publications

  • Amazon mechanical turk: Gold mine or coal mine?

    Karën Fort;Gilles Adda;K. Bretonnel Cohen

  • A shared task involving multi-label classification of clinical free text

    John P. Pestian;Chris Brew;Pawel Matykiewicz;DJ Hovermale

  • Frontiers of biomedical text mining: current progress

    Pierre Zweigenbaum;Dina Demner-Fushman;Hong Yu;Kevin Bretonnel Cohen

  • Biomedical language processing: what's beyond PubMed?

    Lawrence Hunter;K. Bretonnel Cohen

  • Overview of BioCreative II gene normalization.

    Alexander A. Morgan;Zhiyong Lu;Xinglong Wang;Aaron M. Cohen

  • Getting started in text mining.

    K Bretonnel Cohen;Lawrence E Hunter

  • Manual curation is not sufficient for annotation of genomic databases

    William A. Baumgartner;K. Bretonnel Cohen;Lynne M. Fox;George Acquaah-Mensah

  • Concept annotation in the CRAFT corpus

    Michael Bada;Miriam Eckert;Donald Evans;Kristin Garcia

  • BioC: a minimalist approach to interoperability for biomedical text processing

    Donald C. Comeau;Rezarta Islamaj Doğan;Paolo Ciccarese;Kevin Bretonnel Cohen

  • Sentiment Analysis of Suicide Notes: A Shared Task.

    John P. Pestian;Pawel Matykiewicz;Michelle Linn-Gust;Brett R South

  • OpenDMAP: an open source, ontology-driven concept analysis engine, with applications to capturing knowledge regarding protein transport, protein interactions and cell-type-specific gene expression.

    Lawrence Hunter;Zhiyong Lu;James Firby;William A Baumgartner

  • Text mining for the biocuration workflow

    Lynette Hirschman;Gully A. P. C. Burns;Martin Krallinger;Cecilia Arighi

  • MutationFinder: a high-performance system for extracting point mutation mentions from text

    J. Gregory Caporaso;William A. Baumgartner;David A. Randolph;K. Bretonnel Cohen

  • The structural and content aspects of abstracts versus bodies of full text journal articles are different

    K Bretonnel Cohen;K Bretonnel Cohen;Helen L Johnson;Karin Verspoor;Christophe Roeder

  • Text mining and manual curation of chemical-gene-disease networks for the comparative toxicogenomics database (CTD).

    Thomas C Wiegers;Allan Peter Davis;K Bretonnel Cohen;K Bretonnel Cohen;Lynette Hirschman

  • The compositional structure of Gene Ontology terms

    P V Ogren;K B Cohen;G K Acquaah-Mensah;J Eberlein

  • A Machine Learning Approach to Identifying the Thought Markers of Suicidal Subjects: A Prospective Multicenter Trial

    John P. Pestian;Michael Sorter;Brian Connolly;Kevin Bretonnel Cohen

  • Large-scale biomedical concept recognition: an evaluation of current automatic annotators and their parameters

    Christopher S. Funk;William A. Baumgartner;Benjamin Garcia;Christophe Roeder

  • Natural Language Processing and Systems Biology

    K. Bretonnel Cohen;Lawrence Hunter

  • Overview of the BioCreative III Workshop

    Cecilia N. Arighi;Zhiyong Lu;Martin Krallinger;Kevin Bretonnel Cohen

  • A corpus of full-text journal articles is a robust evaluation tool for revealing differences in performance of biomedical natural language processing tools

    Karin Verspoor;Kevin Bretonnel Cohen;Arrick Lanfranchi;Colin Warner

Frequent Co-Authors

Lawrence Hunter
Lawrence Hunter University of Colorado Denver
Karin Verspoor
Karin Verspoor RMIT University
Zhiyong Lu
Zhiyong Lu National Institutes of Health
J. Gregory Caporaso
J. Gregory Caporaso Northern Arizona University
Martha Palmer
Martha Palmer University of Colorado Boulder
Lynette Hirschman
Lynette Hirschman Mitre (United States)
Dina Demner-Fushman
Dina Demner-Fushman National Institutes of Health
Udo Hahn
Udo Hahn Friedrich Schiller University Jena
Jun'ichi Tsujii
Jun'ichi Tsujii University of Manchester
Philip E. Bourne
Philip E. Bourne University of Virginia

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