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Biology and Biochemistry

D-Index
64
Citations
24008
World Ranking
9461
National Ranking
721

Overview

Paul Kersey is affiliated with the European Bioinformatics Institute in the United Kingdom. Their research spans multiple areas within biochemistry, genetics, and molecular biology, with prominent work in agricultural and biological sciences.

The main fields of study for this scientist include:

  • Biochemistry, Genetics and Molecular Biology
  • Agricultural and Biological Sciences

They have contributed extensively to subfields such as:

  • Molecular Biology
  • Plant Science
  • Genetics
  • Ecology
  • Ecological Modeling

Their research topics cover a spectrum of areas featuring genomics and phylogenetics, environmental studies, and genetic variation:

  • Genomics and Phylogenetic Studies
  • Species Distribution and Climate Change
  • Chromosomal and Genetic Variations
  • Genetics, Bioinformatics, and Biomedical Research
  • Identification and Quantification in Food
  • Genetic diversity and population structure
  • Environmental DNA in Biodiversity Studies

Among their recent publications are:

  • MitoHiFi: a python pipeline for mitochondrial genome assembly from PacBio high fidelity reads, 2023, BMC Bioinformatics
  • A DNA barcoding framework for taxonomic verification in the Darwin Tree of Life Project, 2024, Wellcome Open Research
  • Sequence locally, think globally: The Darwin Tree of Life Project, 2022, Proceedings of the National Academy of Sciences
  • The Earth BioGenome Project 2020: Starting the clock, 2022, Proceedings of the National Academy of Sciences
  • A Comprehensive Phylogenomic Platform for Exploring the Angiosperm Tree of Life, 2021, Systematic Biology

They frequently publish in venues such as:

  • Plants People Planet
  • bioRxiv (Cold Spring Harbor Laboratory)
  • Zenodo (CERN European Organization for Nuclear Research)
  • F1000Research
  • Proceedings of the National Academy of Sciences

Collaborations feature recurring co-authors including:

  • William J. Baker
  • Alexandre Antonelli
  • Ilia J. Leitch
  • Cyril Pommier
  • Richard Durbin

Best Publications

  • A chromosome conformation capture ordered sequence of the barley genome

    Martin Mascher;Heidrun Gundlach;Axel Himmelbach;Sebastian Beier

  • Ensembl BioMarts: a hub for data retrieval across taxonomic space

    Rhoda Kinsella;Andreas Kähäri;Syed Haider;Jorge Zamora

  • Analysis of the bread wheat genome using whole-genome shotgun sequencing

    Rachel Brenchley;Manuel Spannagl;Matthias Pfeifer;Gary L. A. Barker

  • Butterfly genome reveals promiscuous exchange of mimicry adaptations among species

    Kanchon K. Dasmahapatra;James R. Walters;Adriana D. Briscoe

  • The International Protein Index: an integrated database for proteomics experiments.

    Paul J. Kersey;Jorge Duarte;Allyson Williams;Youla Karavidopoulou

  • Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species

    Keith R. Bradnam;Joseph N. Fass;Anton Alexandrov;Paul Baranay

  • The HUPO PSI's molecular interaction format--a community standard for the representation of protein interaction data.

    Henning Hermjakob;Luisa Montecchi-Palazzi;Gary Bader;Jérôme Wojcik

  • Multiple reference genomes and transcriptomes for Arabidopsis thaliana

    Xiangchao Gan;Oliver Stegle;Jonas Behr;Joshua G. Steffen

  • Gene ontology annotations and resources

    Blake Ja;Dolan M;Drabkin H

  • Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species

    Keith R. Bradnam;Joseph N. Fass;Anton Alexandrov;Paul Baranay

  • Assemblathon 1: A competitive assessment of de novo short read assembly methods

    Dent Earl;Keith Bradnam;John St. John;Aaron Darling

  • WormBase ParaSite - a comprehensive resource for helminth genomics.

    Kevin L. Howe;Bruce J. Bolt;Myriam Shafie;Paul Kersey

  • Ensembl Genomes 2016: more genomes, more complexity

    Paul Julian Kersey;James E. Allen;Irina Armean;Sanjay Boddu

  • Ensembl Genomes 2020-enabling non-vertebrate genomic research.

    Kevin L. Howe;Bruno Contreras-Moreira;Nishadi De Silva;Gareth Maslen

  • Ensembl Genomes 2018: an integrated omics infrastructure for non-vertebrate species.

    Paul Julian Kersey;James E Allen;Alexis Allot;Matthieu Barba

  • The Gene Ontology Annotation (GOA) project: implementation of GO in SWISS-PROT, TrEMBL, and InterPro.

    Evelyn Camon;Michele Magrane;Daniel Barrell;David Binns

  • Integrative Annotation of 21,037 Human Genes Validated by Full-Length cDNA Clones

    Tadashi Imanishi;Takeshi Itoh;Yutaka Suzuki;Claire O'Donovan

  • An improved assembly and annotation of the allohexaploid wheat genome identifies complete families of agronomic genes and provides genomic evidence for chromosomal translocations

    Bernardo J. Clavijo;Luca Venturini;Christian Schudoma;Gonzalo Garcia Accinelli

  • WormBase 2016: expanding to enable helminth genomic research

    Kevin L. Howe;Bruce J. Bolt;Scott Cain;Juancarlos Chan

  • PomBase: a comprehensive online resource for fission yeast

    Valerie Wood;Midori A. Harris;Mark D. McDowall;Kim Rutherford

Frequent Co-Authors

Rolf Apweiler
Rolf Apweiler European Bioinformatics Institute
Doreen Ware
Doreen Ware Cold Spring Harbor Laboratory
Kevin L. Howe
Kevin L. Howe European Bioinformatics Institute
Nicola Mulder
Nicola Mulder University of Cape Town
Uwe Scholz
Uwe Scholz Leibniz Association
Ewan Birney
Ewan Birney European Molecular Biology Laboratory
Björn Usadel
Björn Usadel Forschungszentrum Jülich
Pankaj Jaiswal
Pankaj Jaiswal Oregon State University
Paul W. Sternberg
Paul W. Sternberg California Institute of Technology
Richard Durbin
Richard Durbin University of Cambridge

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