Mark P. Simmons

Research.com Recognitions

• 2009 - Fellow of John Simon Guggenheim Memorial Foundation

Overview

Best Publications

• Gaps as Characters in Sequence-Based Phylogenetic Analyses

  Mark P. Simmons;Helga Ochoterena

  2892
  Citations

• Functional trait niches of North American lotic insects: traits-based ecological applications in light of phylogenetic relationships

  N. LeRoy Poff;Julian D. Olden;Nicole K. M. Vieira;Debra S. Finn

  1050
  Citations

• Phylogeny and subfamilial classification of the grasses (Poaceae)

  N. P. Barker;L. G. Clark;J. I. Davis

  761
  Citations

• How Meaningful Are Bayesian Support Values

  Mark P. Simmons;Kurt M. Pickett;Masaki Miya

  484
  Citations

• Independence of alignment and tree search

  Mark P. Simmons

  319
  Citations

• Incorporation, relative homoplasy, and effect of gap characters in sequence-based phylogenetic analyses.

  Mark P. Simmons;Helga Ochoterena;Timothy G. Carr

  263
  Citations

• A Phylogeny of the Monocots, as Inferred from rbcL and atpA Sequence Variation, and a Comparison of Methods for Calculating Jackknife and Bootstrap Values

  Jerrold I. Davis;Dennis W. Stevenson;Gitte Petersen;Ole Seberg

  235
  Citations

• Whole-Genome Comparison of Leucine-Rich Repeat Extensins in Arabidopsis and Rice. A Conserved Family of Cell Wall Proteins Form a Vegetative and a Reproductive Clade

  Nicolas Baumberger;Brigitte Doesseger;Romain Guyot;Anouck Diet

  181
  Citations

• Data decisiveness, data quality, and incongruence in phylogenetic analysis: an example from the monocotyledons using mitochondrial atp A sequences.

  Jerrold I. Davis;Mark P. Simmons;Dennis W. Stevenson;Jonathan F. Wendel

  178
  Citations

• New Guinea has the world’s richest island flora

  Rodrigo Cámara-Leret;Rodrigo Cámara-Leret;David G. Frodin;Frits Adema;Christiane Anderson

  176
  Citations

• Phylogeny of the Cucurbitales based on DNA sequences of nine loci from three genomes: Implications for morphological and sexual system evolution

  Li-Bing Zhang;Mark P. Simmons;Alexander Kocyan;Susanne S. Renner

  174
  Citations

• Comprehensive comparative analysis of kinesins in photosynthetic eukaryotes

  Dale N Richardson;Mark P Simmons;Anireddy S N Reddy

  136
  Citations

• Phylogeny of the Celastraceae Inferred from 26S Nuclear Ribosomal DNA, Phytochrome B, rbcL, atpB, and Morphology

  Mark P Simmons;Vincent Savolainen;Curtis C Clevinger;Robert H Archer

  136
  Citations

• The relative performance of indel-coding methods in simulations.

  Mark P. Simmons;Kai Müller;Andrew P. Norton

  126
  Citations

• Phylogeny and Delimitation of the Celastrales Inferred from Nuclear and Plastid Genes

  Li-Bing Zhang;Li-Bing Zhang;Mark P. Simmons

  121
  Citations

• Misleading results of likelihood-based phylogenetic analyses in the presence of missing data

  Mark P. Simmons

  118
  Citations

• Phylogeny of the Celastraceae inferred from phytochrome B gene sequence and morphology.

  Mark P. Simmons;Curtis C. Clevinger;Vincent Savolainen;Robert H. Archer

  118
  Citations

• Radical instability and spurious branch support by likelihood when applied to matrices with non-random distributions of missing data.

  Mark P. Simmons

  105
  Citations

• Cryptic species diversity reveals biogeographic support for the 'mountain passes are higher in the tropics' hypothesis.

  B. A. Gill;B. C. Kondratieff;K. L. Casner;A. C. Encalada

  104
  Citations

• Molecular analyses of the Chinese herb Leigongteng (Tripterygium wilfordii Hook.f.).

  Sue Ka-Yee Law;Mark P. Simmons;Natascha Techen;Ikhlas A. Khan

  103
  Citations