World's Best Scientists 2026 revealed!

D-Index & Metrics

Genetics

D-Index
55
Citations
65829
World Ranking
3524
National Ranking
1526

Overview

Ian F Korf is affiliated with the University of California, Davis in the United States. The primary area of research spans biochemistry, genetics, and molecular biology, with a particular focus on molecular biology and genetics as dominant subfields.

Their research topics include:

  • Gut microbiota and health
  • Genomics and chromatin dynamics
  • Epigenetics and DNA methylation
  • Single-cell and spatial transcriptomics
  • Animal testing and alternatives
  • Genetic mapping and diversity in plants and animals
  • RNA modifications and cancer

Recent publications by Ian F Korf include:

  • Functional annotations of three domestic animal genomes provide vital resources for comparative and agricultural research, 2021, Nature Communications
  • Association of Diet and Antimicrobial Resistance in Healthy U.S. Adults, 2022, mBio
  • A comparative analysis of chromatin accessibility in cattle, pig, and mouse tissues, 2020, BMC Genomics
  • Low-pass whole genome bisulfite sequencing of neonatal dried blood spots identifies a role for RUNX1 in Down syndrome DNA methylation profiles, 2020, Human Molecular Genetics
  • The Mutant Mouse Resource and Research Center (MMRRC): the NIH-supported National Public Repository and Distribution Archive of Mutant Mouse Models in the USA, 2021, Mammalian Genome

Their frequent coauthors include Danielle G. Lemay, Janine M. LaSalle, David A. Mills, Blythe Durbin-Johnson, and Diana H. Taft.

Ian F Korf has published numerous articles in several venues, with the majority of work appearing in bioRxiv (Cold Spring Harbor Laboratory). Additional frequent publication venues include Nature Communications, Mammalian Genome, Research Square, and mBio.

Best Publications

  • Initial sequencing and analysis of the human genome.

    Eric S. Lander;Lauren M. Linton;Bruce Birren;Chad Nusbaum

  • Initial sequencing and comparative analysis of the mouse genome.

    Robert H. Waterston;Kerstin Lindblad-Toh;Ewan Birney;Jane Rogers

  • Gene finding in novel genomes

    Ian F Korf

  • CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes.

    Genis Parra;Keith Bradnam;Ian F Korf

  • The Bioperl Toolkit: Perl Modules for the Life Sciences

    Jason E. Stajich;David Block;David Block;Kris Boulez;Steven E. Brenner

  • MAKER: An easy-to-use annotation pipeline designed for emerging model organism genomes

    Brandi L. Cantarel;Ian F Korf;Sofia M C Robb;Genis Parra

  • The DNA sequence of human chromosome 22

    I. Dunham;N. Shimizu;B. A. Roe;S. Chissoe

  • R-loop formation is a distinctive characteristic of unmethylated human CpG island promoters

    Paul A. Ginno;Paul L. Lott;Holly C. Christensen;Ian F Korf

  • Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species

    Keith R. Bradnam;Joseph N. Fass;Anton Alexandrov;Paul Baranay

  • The Syntenic Relationship of the Zebrafish and Human Genomes

    W. Bradley Barbazuk;W. Bradley Barbazuk;Ian F Korf;Candy Kadavi;Joshua Heyen

  • Draft Genome of the Filarial Nematode Parasite Brugia malayi

    Elodie Ghedin;Elodie Ghedin;Shiliang Wang;David Spiro;Elisabet Caler

  • Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species

    Keith R. Bradnam;Joseph N. Fass;Anton Alexandrov;Paul Baranay

  • A general approach to single-nucleotide polymorphism discovery

    Gabor T. Marth;Ian F Korf;Mark D. Yandell;Raymond T. Yeh

  • Integrating genomic homology into gene structure prediction

    Ian F Korf;Paul Flicek;Daniel Duan;Michael R. Brent

  • Assemblathon 1: A competitive assessment of de novo short read assembly methods

    Dent Earl;Keith Bradnam;John St. John;Aaron Darling

  • Assessing the gene space in draft genomes

    Genis Parra;Keith Bradnam;Zemin Ning;Thomas Keane

  • Comparative analysis of tandem repeats from hundreds of species reveals unique insights into centromere evolution.

    Daniël P. Melters;Keith R. Bradnam;Hugh A. Young;Natalie Telis

  • Genome assembly with in vitro proximity ligation data and whole-genome triplication in lettuce.

    Sebastian Reyes-Chin-Wo;Zhiwen Wang;Xinhua Yang;Alexander Kozik

  • GC skew at the 5′ and 3′ ends of human genes links R-loop formation to epigenetic regulation and transcription termination

    Paul A Ginno;Yoong Wearn Lim;Paul L Lott;Ian F Korf

  • The human placenta methylome

    Diane I. Schroeder;John D. Blair;Paul Lott;Hung On Ken Yu

Frequent Co-Authors

David A. Mills
David A. Mills University of California, Davis
Mark Yandell
Mark Yandell University of Utah
Richard Durbin
Richard Durbin University of Cambridge
Janine M. LaSalle
Janine M. LaSalle University of California, Davis
David Haussler
David Haussler University of California, Santa Cruz
Huaijun Zhou
Huaijun Zhou University of California, Davis
LaDeana W. Hillier
LaDeana W. Hillier University of Washington
Juan F. Medrano
Juan F. Medrano University of California, Davis
Richard K. Wilson
Richard K. Wilson Nationwide Children's Hospital
Richard A. Gibbs
Richard A. Gibbs Baylor College of Medicine

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