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Bernd Bodenmiller

Bernd Bodenmiller

D-Index & Metrics

Biology and Biochemistry

D-Index
62
Citations
24624
World Ranking
10530
National Ranking
186

Overview

Bernd Bodenmiller is affiliated with the University of Zurich in Switzerland. Their research primarily spans the fields of Biochemistry, Genetics and Molecular Biology, with significant work also conducted in Medicine. Within these broader disciplines, Bodenmiller focuses on Molecular Biology, Biophysics, Oncology, Cancer Research, and Immunology.

The scientist's main research topics include single-cell and spatial transcriptomics, cell image analysis techniques, cancer genomics and diagnostics, cancer immunotherapy and biomarkers, cancer cells and metastasis, advanced fluorescence microscopy techniques, and immune cells in cancer.

Among the recent publications authored or co-authored by Bodenmiller are:

  • The single-cell pathology landscape of breast cancer, 2020, Nature
  • Expansion sequencing: Spatially precise in situ transcriptomics in intact biological systems, 2021, Science
  • Imaging mass cytometry and multiplatform genomics define the phenogenomic landscape of breast cancer, 2020, Nature Cancer
  • Cancer-associated fibroblast classification in single-cell and spatial proteomics data, 2023, Nature Communications
  • Breast tumor microenvironment structures are associated with genomic features and clinical outcome, 2022, Nature Genetics

Bodenmiller has published extensively across different venues. The most frequent publication sources include:

  • Zenodo (CERN European Organization for Nuclear Research)
  • bioRxiv (Cold Spring Harbor Laboratory)
  • Nature Communications
  • Nature Methods
  • Cancer Research

Collaboration is a notable aspect of Bodenmiller's work, with frequent co-authors including:

  • Vito RT Zanotelli
  • Natalie de Souza
  • Stéphane Chevrier
  • Holger Moch
  • Nils Eling

Best Publications

  • Highly multiplexed imaging of tumor tissues with subcellular resolution by mass cytometry

    Charlotte Giesen;Hao A O Wang;Denis Schapiro;Nevena Zivanovic

  • The Human Cell Atlas

    Aviv Regev;Aviv Regev;Aviv Regev;Sarah A Teichmann;Sarah A Teichmann;Sarah A Teichmann;Eric S Lander;Eric S Lander;Eric S Lander;Ido Amit

  • Full Dynamic Range Proteome Analysis of S. cerevisiae by Targeted Proteomics

    Paola Picotti;Bernd Bodenmiller;Lukas N. Mueller;Bruno Domon

  • An Immune Atlas of Clear Cell Renal Cell Carcinoma

    Stéphane Chevrier;Jacob Harrison Levine;Vito Riccardo Tomaso Zanotelli;Karina Silina

  • SuperHirn - a novel tool for high resolution LC-MS-based peptide/protein profiling.

    Lukas N. Mueller;Oliver Rinner;Alexander Schmidt;Simon Letarte

  • The single-cell pathology landscape of breast cancer

    Hartland W. Jackson;Jana R. Fischer;Vito R. T. Zanotelli;H. Raza Ali;H. Raza Ali

  • Reproducible isolation of distinct, overlapping segments of the phosphoproteome

    Bernd Bodenmiller;Lukas N Mueller;Markus Mueller;Bruno Domon

  • A Single-Cell Atlas of the Tumor and Immune Ecosystem of Human Breast Cancer

    Johanna Wagner;Maria Anna Rapsomaniki;Stéphane Chevrier;Tobias Anzeneder

  • Orm family proteins mediate sphingolipid homeostasis

    David K. Breslow;Sean R. Collins;Bernd Bodenmiller;Ruedi Aebersold

  • Dual specificity kinase DYRK3 couples stress granule condensation/dissolution to mTORC1 signaling.

    Frank Wippich;Bernd Bodenmiller;Maria Gustafsson Trajkovska;Stefanie Wanka

  • Multiplexed mass cytometry profiling of cellular states perturbed by small-molecule regulators

    Bernd Bodenmiller;Eli R Zunder;Rachel Finck;Tiffany J Chen

  • Palladium-based mass tag cell barcoding with a doublet-filtering scheme and single-cell deconvolution algorithm

    Eli R Zunder;Rachel Finck;Gregory K Behbehani;El-Ad D Amir

  • histoCAT: analysis of cell phenotypes and interactions in multiplex image cytometry data.

    Denis Schapiro;Hartland W Jackson;Swetha Raghuraman;Jana R Fischer

  • Rewiring of genetic networks in response to DNA damage

    Sourav Bandyopadhyay;Monika Mehta;Dwight Kuo;Min Kyung Sung

  • Automated identification of stratifying signatures in cellular subpopulations

    Robert V. Bruggner;Bernd Bodenmiller;David L. Dill;Robert J. Tibshirani

  • Characterization of the rapamycin-sensitive phosphoproteome reveals that Sch9 is a central coordinator of protein synthesis

    Alexandre Huber;Bernd Bodenmiller;Aino Uotila;Michael Stahl

  • Quantitative phosphoproteome analysis using a dendrimer conjugation chemistry and tandem mass spectrometry.

    W Andy Tao;W Andy Tao;Bernd Wollscheid;Robert O'Brien;Jimmy K Eng

  • Phosphoproteomic Analysis Reveals Interconnected System-Wide Responses to Perturbations of Kinases and Phosphatases in Yeast

    Bernd Bodenmiller;Stefanie Wanka;Claudine Kraft;Joerg Urban

  • Channel crosstalk correction in suspension and imaging mass cytometry

    Stéphane Chevrier;Helena Crowell;Vito Zanotelli;Stefanie Engler

  • The human body at cellular resolution: the NIH Human Biomolecular Atlas Program

    Michael P. Snyder;Shin Lin

Frequent Co-Authors

Julio Saez-Rodriguez
Julio Saez-Rodriguez Heidelberg University
Garry P. Nolan
Garry P. Nolan Stanford University
Paola Picotti
Paola Picotti ETH Zurich
Dana Pe'er
Dana Pe'er Memorial Sloan Kettering Cancer Center
John C. Marioni
John C. Marioni European Bioinformatics Institute
Sarah A. Teichmann
Sarah A. Teichmann University of Cambridge
Aviv Regev
Aviv Regev Genentech
Eric S. Lander
Eric S. Lander Broad Institute
Wolf Reik
Wolf Reik Babraham Institute

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