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Biology and Biochemistry

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69
Citations
26157
World Ranking
7250
National Ranking
135

Overview

Tanja Stadler is affiliated with the Swiss Institute of Bioinformatics in Switzerland. Their research spans multiple disciplines, primarily focusing on Medicine and Biochemistry, Genetics, and Molecular Biology. Within these broader fields, Stadler's work covers specialized subfields including Infectious Diseases, Molecular Biology, Epidemiology, Modeling and Simulation, and Genetics.

The scientist's publication record highlights active contributions to the study of COVID-19, particularly in epidemiological and genomic research. Key topics in their work include COVID-19 epidemiological studies, SARS-CoV-2 and COVID-19 research, genomics and phylogenetic studies, SARS-CoV-2 detection and testing, antibiotic resistance in bacteria, as well as evolution and genetic dynamics.

Stadler has contributed to several research articles of significance. Among notable recent papers are:

  • "Practical considerations for measuring the effective reproductive number, Rt" (2020), published in PLoS Computational Biology
  • "Emergence and spread of a SARS-CoV-2 variant through Europe in the summer of 2020" (2020), published in bioRxiv (Cold Spring Harbor Laboratory)
  • "CoV-Spectrum: analysis of globally shared SARS-CoV-2 data to identify and characterize new variants" (2021), published in Bioinformatics
  • "Tracking the international spread of SARS-CoV-2 lineages B.1.1.7 and B.1.351/501Y-V2 with grinch" (2021), published in Wellcome Open Research
  • "Tracking the international spread of SARS-CoV-2 lineages B.1.1.7 and B.1.351/501Y-V2" (2021), published in Wellcome Open Research

In scientific collaboration, Stadler frequently coauthors with several researchers, including:

  • Timothy G. Vaughan
  • Jana S. Huisman
  • Sarah Nadeau
  • Adrian Egli
  • Sarah Tschudin-Sutter

Regarding publication outlets, Stadler's research is predominantly published in venues such as bioRxiv (Cold Spring Harbor Laboratory) with 62 publications, PLoS Computational Biology, Molecular Biology and Evolution, Proceedings of the National Academy of Sciences, and Epidemics, each with multiple publications.

Best Publications

  • BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis.

    Remco Bouckaert;Remco Bouckaert;Timothy G Vaughan;Timothy G Vaughan;Joëlle Barido-Sottani;Joëlle Barido-Sottani;Sebastián Duchêne

  • Amazonia Through Time: Andean Uplift, Climate Change, Landscape Evolution, and Biodiversity

    C. Hoorn;F. P. Wesselingh;H. ter Steege;M. A. Bermudez

  • Impacts of the Cretaceous Terrestrial Revolution and KPg Extinction on Mammal Diversification

    Robert W. Meredith;Jan E. Janečka;John Gatesy;Oliver A. Ryder

  • The fossilized birth–death process for coherent calibration of divergence-time estimates

    Tracy A. Heath;John P. Huelsenbeck;Tanja Stadler

  • Birth–death skyline plot reveals temporal changes of epidemic spread in HIV and hepatitis C virus (HCV)

    Tanja Stadler;Denise Kühnert;Sebastian Bonhoeffer;Alexei J. Drummond

  • Practical considerations for measuring the effective reproductive number, Rt.

    Katelyn M Gostic;Lauren McGough;Edward B Baskerville;Sam Abbott

  • Macroevolutionary dynamics and historical biogeography of primate diversification inferred from a species supermatrix

    Mark S. Springer;Robert W Meredith;Robert W Meredith;John Gatesy;Christopher A Emerling

  • Sampling-through-time in birth-death trees.

    Tanja Stadler

  • Mammalian phylogeny reveals recent diversification rate shifts

    Tanja Stadler

  • On incomplete sampling under birth–death models and connections to the sampling-based coalescent

    Tanja Stadler

  • Spread of a SARS-CoV-2 variant through Europe in the summer of 2020.

    Emma B. Hodcroft;Emma B. Hodcroft;Emma B. Hodcroft;Moira Zuber;Sarah Nadeau;Sarah Nadeau;Timothy G. Vaughan;Timothy G. Vaughan

  • Diversity-dependence brings molecular phylogenies closer to agreement with the fossil record

    Rampal S. Etienne;Bart Haegeman;Tanja Stadler;Tracy Aze

  • Total-Evidence Dating under the Fossilized Birth-Death Process.

    Chi Zhang;Tanja Stadler;Tanja Stadler;Seraina Klopfstein;Seraina Klopfstein;Tracy A. Heath;Tracy A. Heath;Tracy A. Heath

  • Bayesian Inference of Sampled Ancestor Trees for Epidemiology and Fossil Calibration

    Alexandra Gavryushkina;David Welch;Tanja Stadler;Alexei J. Drummond

  • Bayesian Total-Evidence Dating Reveals the Recent Crown Radiation of Penguins

    Alexandra Gavryushkina;Tracy A. Heath;Daniel T. Ksepka;Tanja Stadler

  • Simulating Trees with a Fixed Number of Extant Species

    Tanja Stadler

  • Estimating the Basic Reproductive Number from Viral Sequence Data

    Tanja Stadler;Roger Kouyos;Viktor von Wyl;Sabine Yerly

  • Emergence and spread of a SARS-CoV-2 variant through Europe in the summer of 2020

    Emma B. Hodcroft;Emma B. Hodcroft;Moira Zuber;Sarah Nadeau;Sarah Nadeau;Iñaki Comas

  • The contrasting phylodynamics of human influenza B viruses

    Dhanasekaran Vijaykrishna;Edward C. Holmes;Udayan Joseph;Mathieu Fourment

  • Geographical and temporal distribution of SARS-CoV-2 clades in the WHO European Region, January to June 2020.

    Erik Alm;Eeva K Broberg;Thomas Connor;Emma B Hodcroft

Frequent Co-Authors

Alexei J. Drummond
Alexei J. Drummond University of Auckland
Richard A. Neher
Richard A. Neher University of Basel
Roger D. Kouyos
Roger D. Kouyos University of Zurich
Huldrych F. Günthard
Huldrych F. Günthard University of Zurich
Hans H. Hirsch
Hans H. Hirsch University Hospital of Basel
Sabine Yerly
Sabine Yerly University of Geneva
David W. Welch
David W. Welch University of Auckland

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