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D-Index & Metrics

Biology and Biochemistry

D-Index
46
Citations
8635
World Ranking
18909
National Ranking
191

Overview

Tamir Tuller is affiliated with Tel Aviv University in Israel and has made extensive contributions to the field of Biochemistry, Genetics and Molecular Biology, with a particular focus on Molecular Biology. Their research spans various subfields including Genetics, Ecology, Plant Science, and Infectious Diseases.

The primary topics explored in their work include:

  • RNA and protein synthesis mechanisms
  • RNA modifications and cancer
  • RNA Research and Splicing
  • Genomics and Phylogenetic Studies
  • CRISPR and Genetic Engineering
  • Bacterial Genetics and Biotechnology
  • Protein Structure and Dynamics

Tuller has published widely with frequent appearances in leading scientific journals. The venues where they have contributed most prolifically include:

  • bioRxiv (Cold Spring Harbor Laboratory)
  • Computational and Structural Biotechnology Journal
  • Scientific Reports
  • PLoS Computational Biology
  • Genome biology

Among recent publications are:

  • Codon-based indices for modeling gene expression and transcript evolution, 2021, Computational and Structural Biotechnology Journal
  • Widespread non-modular overlapping codes in the coding regions*, 2020, Physical Biology
  • High-resolution modeling of the selection on local mRNA folding strength in coding sequences across the tree of life, 2020, Genome biology
  • MPEPE, a predictive approach to improve protein expression in E. coli based on deep learning, 2022, Computational and Structural Biotechnology Journal
  • Quantifying the distribution of protein oligomerization degree reflects cellular information capacity, 2020, Scientific Reports

Tamirs's research collaborations have involved several frequent co-authors, including:

  • Shaked Bergman
  • Matan Arbel
  • Itamar Menuhin-Gruman
  • Doron Naki
  • Zohar Zafrir

Best Publications

  • An evolutionarily conserved mechanism for controlling the efficiency of protein translation.

    Tamir Tuller;Asaf Carmi;Kalin Vestsigian;Sivan Navon

  • The effect of tRNA levels on decoding times of mRNA codons

    Alexandra Dana;Tamir Tuller

  • The average common substring approach to phylogenomic reconstruction.

    Igor Ulitsky;David Burstein;Tamir Tuller;Benny Chor

  • Composite effects of gene determinants on the translation speed and density of ribosomes

    Tamir Tuller;Isana Veksler-Lublinsky;Nir Gazit;Martin Kupiec

  • Genome-scale analysis of translation elongation with a ribosome flow model.

    Shlomi Reuveni;Isaac Meilijson;Martin Kupiec;Eytan Ruppin

  • Multiple roles of the coding sequence 5′ end in gene expression regulation

    Tamir Tuller;Hadas Zur

  • Determinants of protein abundance and translation efficiency in S. cerevisiae.

    Tamir Tuller;Martin Kupiec;Eytan Ruppin

  • Maximum likelihood of phylogenetic networks

    Guohua Jin;Luay Nakhleh;Sagi Snir;Tamir Tuller

  • Determinants of translation elongation speed and ribosomal profiling biases in mouse embryonic stem cells.

    Alexandra Dana;Tamir Tuller

  • A model for competition for ribosomes in the cell.

    Alon Raveh;Michael Margaliot;Eduardo D. Sontag;Tamir Tuller

  • Association between translation efficiency and horizontal gene transfer within microbial communities

    Tamir Tuller;Yana Girshovich;Yael Sella;Avi Kreimer

  • Maximum likelihood of evolutionary trees: hardness and approximation

    Benny Chor;Tamir Tuller

  • Modelling the Efficiency of Codon–tRNA Interactions Based on Codon Usage Bias

    Renana Sabi;Tamir Tuller

  • Predictive biophysical modeling and understanding of the dynamics of mRNA translation and its evolution

    Hadas Zur;Tamir Tuller

  • New universal rules of eukaryotic translation initiation fidelity.

    Hadas Zur;Tamir Tuller

  • Strong association between mRNA folding strength and protein abundance in S. cerevisiae

    Hadas Zur;Tamir Tuller

  • Common and specific signatures of gene expression and protein–protein interactions in autoimmune diseases

    T Tuller;S Atar;E Ruppin;M Gurevich

  • Entrainment to periodic initiation and transition rates in a computational model for gene translation.

    Michael Margaliot;Eduardo D. Sontag;Tamir Tuller

  • Inferring Phylogenetic Networks by the Maximum Parsimony Criterion: A Case Study

    Guohua Jin;Luay Nakhleh;Sagi Snir;Tamir Tuller

  • Translation efficiency in humans: tissue specificity, global optimization and differences between developmental stages

    Yedael Y. Waldman;Tamir Tuller;Tomer Shlomi;Roded Sharan

Frequent Co-Authors

Michael Margaliot
Michael Margaliot Tel Aviv University
Martin Kupiec
Martin Kupiec Tel Aviv University
Eytan Ruppin
Eytan Ruppin National Institutes of Health
Benny Chor
Benny Chor Tel Aviv University
Eduardo D. Sontag
Eduardo D. Sontag Northeastern University
Luay Nakhleh
Luay Nakhleh Rice University
Uri Gophna
Uri Gophna Tel Aviv University
Daniel A. Chamovitz
Daniel A. Chamovitz Ben-Gurion University of the Negev
Yitzhak Pilpel
Yitzhak Pilpel Weizmann Institute of Science
Ehud Shapiro
Ehud Shapiro Weizmann Institute of Science

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