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Genetics

D-Index
76
Citations
29388
World Ranking
1802
National Ranking
28

Overview

Klaas Vandepoele is affiliated with the Vlaams Instituut voor Biotechnologie in Belgium. Their research spans multiple fields, primarily focusing on Biochemistry, Genetics, and Molecular Biology as well as Agricultural and Biological Sciences.

The scientist's work engages deeply with various subfields, including Molecular Biology, Plant Science, Biomaterials, Ecology, and Genetics. Main topics covered in their research include Plant Molecular Biology Research, Diatoms and Algae Research, Genomics and Phylogenetic Studies, Microbial Community Ecology and Physiology, Protist Diversity and Phylogeny, Plant Gene Expression Analysis, and Genetic Mapping and Diversity in Plants and Animals.

Vandepoele's publication record contains significant contributions to peer-reviewed journals and book publications. Selected recent papers include:

  • JASPAR 2022: the 9th release of the open-access database of transcription factor binding profiles, 2021, Nucleic Acids Research
  • PLAZA 5.0: extending the scope and power of comparative and functional genomics in plants, 2021, Nucleic Acids Research
  • Neoproterozoic origin and multiple transitions to macroscopic growth in green seaweeds, 2020, Proceedings of the National Academy of Sciences
  • The Seminavis robusta genome provides insights into the evolutionary adaptations of benthic diatoms, 2020, Nature Communications
  • The Quest for Orthologs orthology benchmark service in 2022, 2022, Nucleic Acids Research

Vandepoele has also contributed to book publications from major scientific publishers:

  • Plant Gene Regulatory Networks, 2023, Springer Science+Business Media
  • Prediction of transcription factor regulators and gene regulatory networks in tomato using binding site information, 2022, European Organization for Nuclear Research

The scientist frequently publishes in various venues, with notable activity in:

  • bioRxiv (Cold Spring Harbor Laboratory)
  • Zenodo (CERN European Organization for Nuclear Research)
  • Nucleic Acids Research
  • The Plant Journal
  • Frontiers in Plant Science

Klaas Vandepoele collaborates regularly with several coauthors who appear frequently in their publications. These include Nicolás Manosalva Pérez, Wim Vyverman, Lieven De Veylder, Michiel Van Bel, and Gust Bilcke.

Best Publications

  • ROS signaling: the new wave?

    Ron Mittler;Ron Mittler;Sandy Vanderauwera;Nobuhiro Suzuki;Gad Miller

  • The Phaeodactylum genome reveals the evolutionary history of diatom genomes

    Chris Bowler;Andrew E. Allen;Andrew E. Allen;Jonathan H. Badger;Jane Grimwood

  • JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework

    Aziz Khan;Oriol Fornes;Arnaud Stigliani;Marius Gheorghe

  • JASPAR 2022: the 9th release of the open-access database of transcription factor binding profiles.

    Jaime A Castro-Mondragon;Rafael Riudavets-Puig;Ieva Rauluseviciute;Roza Berhanu Lemma

  • A High Quality Draft Consensus Sequence of the Genome of a Heterozygous Grapevine Variety

    Riccardo Velasco;Andrey Zharkikh;Michela Troggio;Dustin A. Cartwright

  • Genome-Wide Analysis of Core Cell Cycle Genes in Arabidopsis

    Klaas Vandepoele;Jeroen Raes;Jeroen Raes;Lieven De Veylder;Pierre Rouzé

  • Structural and functional partitioning of bread wheat chromosome 3B.

    Frédéric Choulet;Adriana Alberti;Sébastien Theil;Natasha Glover

  • The hidden duplication past of Arabidopsis thaliana

    Cedric Simillion;Klaas Vandepoele;Marc C. E. Van Montagu;Marc Zabeau

  • Major events in the genome evolution of vertebrates: paranome age and size differ considerably between ray-finned fishes and land vertebrates.

    Klaas Vandepoele;Wouter de Vos;John S. Taylor;Axel Meyer

  • The Physcomitrella patens chromosome-scale assembly reveals moss genome structure and evolution.

    Daniel Lang;Kristian K. Ullrich;Florent Murat;Joerg Fuchs

  • The gain and loss of genes during 600 million years of vertebrate evolution

    Tine Blomme;Klaas Vandepoele;Stefanie De Bodt;Cedric Simillion

  • PLAZA 4.0 : an integrative resource for functional, evolutionary and comparative plant genomics

    Michiel Van Bel;Tim Diels;Emmelien Vancaester;Lukasz Kreft

  • Type II Metacaspases Atmc4 and Atmc9 of Arabidopsis thaliana Cleave Substrates after Arginine and Lysine

    Dominique Vercammen;Brigitte van de Cotte;Geert De Jaeger;Dominique Eeckhout

  • An update on LNCipedia: a database for annotated human lncRNA sequences

    Pieter-Jan Volders;Kenneth Verheggen;Gerben Menschaert;Klaas Vandepoele

  • Convergent gene loss following gene and genome duplications creates single-copy families in flowering plants

    Riet De Smet;Keith L. Adams;Klaas Vandepoele;Marc C. E. Van Montagu

  • The Membrane-Bound NAC Transcription Factor ANAC013 Functions in Mitochondrial Retrograde Regulation of the Oxidative Stress Response in Arabidopsis

    Inge De Clercq;Vanessa Vermeirssen;Olivier Van Aken;Olivier Van Aken;Klaas Vandepoele

  • ERF115 Controls Root Quiescent Center Cell Division and Stem Cell Replenishment

    Jefri Heyman;Toon Cools;Filip Vandenbussche;Ken S. Heyndrickx

  • PLAZA 3.0: an access point for plant comparative genomics

    Sebastian Proost;Michiel Van Bel;Dries Vaneechoutte;Yves Van de Peer;Yves Van de Peer

  • PLAZA: a comparative genomics resource to study gene and genome evolution in plants.

    Sebastian Proost;Sebastian Proost;Michiel Van Bel;Michiel Van Bel;Lieven Sterck;Lieven Sterck;Kenny Billiau;Kenny Billiau

  • Predicting protein-protein interactions in Arabidopsis thaliana through integration of orthology, gene ontology and co-expression.

    Stefanie De Bodt;Sebastian Proost;Klaas Vandepoele;Pierre Rouzé

Frequent Co-Authors

Yves Van de Peer
Yves Van de Peer Ghent University
Dirk Inzé
Dirk Inzé Ghent University
Lieven De Veylder
Lieven De Veylder Ghent University
Wim Vyverman
Wim Vyverman Ghent University
Geert De Jaeger
Geert De Jaeger Ghent University
Frank Van Breusegem
Frank Van Breusegem Ghent University
Kris Gevaert
Kris Gevaert Ghent University
Alain Goossens
Alain Goossens Ghent University
Stephane Rombauts
Stephane Rombauts Ghent University
Frederik Leliaert
Frederik Leliaert Ghent University

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