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Biology and Biochemistry

D-Index
56
Citations
35836
World Ranking
14128
National Ranking
5956

Overview

John F. Heidelberg is affiliated with the University of Southern California in the United States. Their research spans multiple fields within environmental science and molecular biology, with a particular focus on microbial communities and ecological dynamics in marine and coastal environments.

Their main fields of study include:

  • Environmental Science
  • Biochemistry, Genetics and Molecular Biology

Within these broader disciplines, Heidelberg's work addresses subfields such as:

  • Ecology
  • Molecular Biology
  • Oceanography
  • Plant Science
  • Renewable Energy, Sustainability and the Environment

The primary research topics they cover are:

  • Microbial Community Ecology and Physiology
  • Genomics and Phylogenetic Studies
  • Marine and coastal plant biology
  • Coastal wetland ecosystem dynamics
  • Plant Growth Enhancement Techniques
  • Algal biology and biofuel production
  • Protist diversity and phylogeny

John F. Heidelberg has published several papers with notable recent works including:

  • "Effects of depth-cycling on nutrient uptake and biomass production in the giant kelp Macrocystis pyrifera" (2021) in Renewable and Sustainable Energy Reviews
  • "Metagenome-Assembled Genome HetDA_MAG_MH13 of the Family Devosiaceae, from a Marine N2-fixing Cyanobacterial Enrichment Culture" (2023) in Microbiology Resource Announcements
  • "Genome Sequence of a Heterocystous Diazotroph Isolated from a Trichodesmium Consortium from the North Pacific Subtropical Gyre" (2022) in Microbiology Resource Announcements
  • "Metagenome-Assembled Genome of a Cyclobacteriaceae Bacterium, HetDA_MAG_MS6, Isolated from a Trichodesmium Consortium from Station ALOHA" (2022) in Microbiology Resource Announcements
  • "Genome Sequence of the Euphotic Hawaiian Gammaproteobacterium HetDA_MAG_MS8, in the Order Nevskiales, Family Oceanococcaceae, Genus Oceanococcus" (2022) in Microbiology Resource Announcements

They frequently publish in the following venues:

  • Microbiology Resource Announcements
  • Renewable and Sustainable Energy Reviews

John F. Heidelberg collaborates regularly with several co-authors, including:

  • Elaina Graham
  • Eric A. Webb
  • Ignacio Navarrete
  • Diane Y. Kim
  • Cindy Wilcox

Their work reflects an interdisciplinary approach combining genomic and ecological methods to investigate marine microbial ecosystems and related biogeochemical cycles. This research contributes to understanding the complexity of microbial functions in oceanic and coastal environments and explores applications linked to biofuel production and sustainability.

Best Publications

  • Environmental Genome Shotgun Sequencing of the Sargasso Sea

    J. Craig Venter;Karin Remington;John F. Heidelberg;Aaron L. Halpern

  • The Sorcerer II Global Ocean Sampling Expedition: Northwest Atlantic through Eastern Tropical Pacific

    Douglas B. Rusch;Aaron L Halpern;Granger Sutton;Karla B. Heidelberg;Karla B. Heidelberg

  • DNA sequence of both chromosomes of the cholera pathogen Vibrio cholerae

    John F. Heidelberg;Jonathan A. Eisen;William C. Nelson;Rebecca A. Clayton

  • Evidence for lateral gene transfer between Archaea and Bacteria from genome sequence of Thermotoga maritima

    Karen E. Nelson;Rebecca A. Clayton;Steven R. Gill;Michelle L. Gwinn

  • Complete Genome Sequence of a Virulent Isolate of Streptococcus pneumoniae

    H. Tettelin;K. E. Nelson;I. T. Paulsen;Jonathan A Eisen

  • Complete Genome Sequence of Neisseria meningitidis Serogroup B Strain MC58

    Hervé Tettelin;Nigel J. Saunders;John Heidelberg;Alex C. Jeffries

  • Identification of a conserved bacterial protein secretion system in Vibrio cholerae using the Dictyostelium host model system

    Stefan Pukatzki;Amy T. Ma;Derek Sturtevant;Bryan Krastins

  • Genome sequence of the radioresistant bacterium Deinococcus radiodurans R1.

    O. White;J. A. Eisen;J. F. Heidelberg;E. K. Hickey

  • Role of Mobile DNA in the Evolution of Vancomycin-Resistant Enterococcus faecalis

    I. T. Paulsen;L. Banerjei;G. S. A. Myers;K. E. Nelson

  • Genome sequence of the dissimilatory metal ion-reducing bacterium Shewanella oneidensis.

    John F. Heidelberg;Ian T. Paulsen;Karen E. Nelson;Eric J. Gaidos;Eric J. Gaidos

  • Genome sequences of Chlamydia trachomatis MoPn and Chlamydia pneumoniae AR39

    T. D. Read;R. C. Brunham;C. Shen;S. R. Gill

  • Genome of Geobacter sulfurreducens: Metal Reduction in Subsurface Environments

    B. A. Methé;K. E. Nelson;Jonathan A Eisen;I. T. Paulsen

  • The genome sequence of the anaerobic, sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough

    John F Heidelberg;Rekha Seshadri;Shelley A Haveman;Christopher L Hemme

  • Complete genome sequence of the Q-fever pathogen Coxiella burnetii

    Rekha Seshadri;Ian T. Paulsen;Ian T. Paulsen;Jonathan A. Eisen;Jonathan A. Eisen;Timothy D. Read

  • Complete genome sequence of Caulobacter crescentus.

    William C. Nierman;Tamara V. Feldblyum;Michael T. Laub;Ian T. Paulsen

  • The Brucella suis genome reveals fundamental similarities between animal and plant pathogens and symbionts

    Ian T. Paulsen;Ian T. Paulsen;Rekha Seshadri;Karen E. Nelson;Jonathan A. Eisen;Jonathan A. Eisen

  • Activity of abundant and rare bacteria in a coastal ocean.

    Barbara J. Campbell;Liying Yu;John F. Heidelberg;David L. Kirchman

  • Comparative genomic analysis of Vibrio cholerae: genes that correlate with cholera endemic and pandemic disease.

    Michelle Dziejman;Emmy Balon;Dana Boyd;Clare M. Fraser

  • Genome Sequence of the PCE-Dechlorinating Bacterium Dehalococcoides ethenogenes

    Rekha Seshadri;Lorenz Adrian;Derrick E. Fouts;Jonathan A. Eisen

  • Genome sequence of Silicibacter pomeroyi reveals adaptations to the marine environment

    Mary Ann Moran;Alison Buchan;José M. González;John F. Heidelberg

Frequent Co-Authors

William C. Nelson
William C. Nelson Pacific Northwest National Laboratory
Jonathan A. Eisen
Jonathan A. Eisen University of California, Davis
Claire M. Fraser
Claire M. Fraser University of Maryland, Baltimore
Ian T. Paulsen
Ian T. Paulsen Macquarie University
Robert J. Dodson
Robert J. Dodson Northwestern University
Robert T. DeBoy
Robert T. DeBoy J. Craig Venter Institute
Karen E. Nelson
Karen E. Nelson J. Craig Venter Institute
Daniel H. Haft
Daniel H. Haft National Institutes of Health
Steven L. Salzberg
Steven L. Salzberg Johns Hopkins University
Hoda Khouri
Hoda Khouri J. Craig Venter Institute

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