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Johannes H. de Winde

Johannes H. de Winde

D-Index & Metrics

Biology and Biochemistry

D-Index
47
Citations
10065
World Ranking
18626
National Ranking
443

Overview

Johannes H. de Winde is affiliated with Leiden University in the Netherlands. Their research spans the fields of biochemistry, genetics, molecular biology, and environmental science, with a focus on subfields including molecular biology, pollution, genetics, biomedical engineering, and ecology.

The scientist's work covers a range of topics, primarily centered on bacterial genetics and biotechnology, microplastics and plastic pollution, biodegradable polymer synthesis and properties, microbial metabolic engineering and bioproduction, genomics and phylogenetic studies, bacteriophages and microbial interactions, as well as enzyme catalysis and immobilization.

Frequent coauthors collaborating with Johannes H. de Winde include Hadiastri Kusumawardhani, Arthur F. J. Ram, Rohola Hosseini, Marjolein E. Crooijmans, and Jo-Anne Verschoor.

Their publications are often found in journals such as bioRxiv (Cold Spring Harbor Laboratory), Frontiers in Microbiology, Applied and Environmental Microbiology, Communications Biology, and Microorganisms.

Recent notable papers authored or coauthored by Johannes H. de Winde include:

  • "Polyester degradation by soil bacteria: identification of conserved BHETase enzymes in Streptomyces," 2024, Communications Biology
  • "Compatible solutes determine the heat resistance of conidia," 2023, Fungal Biology and Biotechnology
  • "Toward Microbial Recycling and Upcycling of Plastics: Prospects and Challenges," 2022, Frontiers in Microbiology
  • "Adaptive Laboratory Evolution Restores Solvent Tolerance in Plasmid-Cured Pseudomonas putida S12: a Molecular Analysis," 2021, Applied and Environmental Microbiology
  • "Novel Toxin-Antitoxin Module SlvT-SlvA Regulates Megaplasmid Stability and Incites Solvent Tolerance in Pseudomonas putida S12," 2020, Applied and Environmental Microbiology

Best Publications

  • Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88

    Herman J. Pel;Johannes H. De Winde;Johannes H. De Winde;David B. Archer;Paul S. Dyer

  • Novel sensing mechanisms and targets for the cAMP-protein kinase A pathway in the yeast Saccharomyces cerevisiae.

    Johan Thevelein;JH de Winde

  • A Saccharomyces cerevisiae G-protein coupled receptor, Gpr1, is specifically required for glucose activation of the cAMP pathway during the transition to growth on glucose.

    Leon Kraakman;Katleen Lemaire;Pingsheng Ma;Aloys W.R.H. Teunissen

  • The Genome-wide Transcriptional Responses of Saccharomyces cerevisiae Grown on Glucose in Aerobic Chemostat Cultures Limited for Carbon, Nitrogen, Phosphorus, or Sulfur

    Viktor M. Boer;Johannes H. de Winde;Johannes H. de Winde;Jack T. Pronk;Matthew D.W. Piper

  • Involvement of distinct G-proteins, Gpa2 and Ras, in glucose- and intracellular acidification-induced cAMP signalling in the yeast Saccharomyces cerevisiae.

    Sonia Colombo;Pingsheng Ma;Liesbet Cauwenberg;Joris Winderickx

  • Role of transcriptional regulation in controlling fluxes in central carbon metabolism of Saccharomyces cerevisiae. A chemostat culture study.

    Pascale Daran-Lapujade;Mickel L.A. Jansen;Jean-Marc Daran;Walter van Gulik

  • Identification and characterization of the furfural and 5-(hydroxymethyl)furfural degradation pathways of Cupriavidus basilensis HMF14

    Frank Koopman;Nick Wierckx;Johannes H. de Winde;Harald J. Ruijssenaars

  • Glucose‐induced cAMP signalling in yeast requires both a G‐protein coupled receptor system for extracellular glucose detection and a separable hexose kinase‐dependent sensing process

    Filip Rolland;Johannes H. de Winde;Katleen Lemaire;Eckhard Boles

  • Efficient whole-cell biotransformation of 5-(hydroxymethyl)furfural into FDCA, 2,5-furandicarboxylic acid.

    Frank Koopman;Nick Wierckx;Johannes H. de Winde;Harald J. Ruijssenaars

  • Isolation and characterization of novel bacterial strains exhibiting ligninolytic potential

    Luaine Bandounas;Nick Jp Wierckx;Johannes H de Winde;Harald J Ruijssenaars

  • The fluxes through glycolytic enzymes in Saccharomyces cerevisiae are predominantly regulated at posttranscriptional levels.

    Pascale Daran-Lapujade;Sergio Rossell;Walter M. van Gulik;Marijke A. H. Luttik

  • Microbial degradation of furanic compounds: biochemistry, genetics, and impact

    Nick Wierckx;Frank Koopman;Harald J. Ruijssenaars;Johannes H. de Winde

  • Measuring enzyme activities under standardized in vivo-like conditions for Systems Biology

    Karen van Eunen;Jildau Bouwman;Pascale Daran-Lapujade;Jarne Postmus

  • A novel regulator of G protein signalling in yeast, Rgs2, downregulates glucose-activation of the cAMP pathway through direct inhibition of Gpa2

    Matthias Versele;Johannes H. de Winde;Johan M. Thevelein

  • Two-dimensional Transcriptome Analysis in Chemostat Cultures COMBINATORIAL EFFECTS OF OXYGEN AVAILABILITY AND MACRONUTRIENT LIMITATION IN SACCHAROMYCES CEREVISIAE

    Siew Leng Tai;Viktor M. Boer;Pascale Daran-Lapujade;Michael C. Walsh

  • Bioproduction of p-Hydroxystyrene from Glucose by the Solvent-Tolerant Bacterium Pseudomonas putida S12 in a Two-Phase Water-Decanol Fermentation

    Suzanne Verhoef;Nick Wierckx;R. G. Maaike Westerhof;Johannes H. de Winde

  • Nutrient-induced signal transduction through the protein kinase A pathway and its role in the control of metabolism, stress resistance, and growth in yeast

    Johan M. Thevelein;Liesbet Cauwenberg;Sonia Colombo;Johannes H. De Winde

  • Differential Requirement of the Yeast Sugar Kinases for Sugar Sensing in Establishing the Catabolite-Repressed State

    Johannes H. De Winde;Marion Crauwels;Stefan Hohmann;Stefan Hohmann;Johan M. Thevelein

  • The Sch9 protein kinase in the yeast Saccharomyces cerevisiae controls cAPK activity and is required for nitrogen activation of the fermentable-growth-medium-induced (FGM) pathway.

    Marion Crauwels;Monica C. V. Donaton;Maria Beatriz Pernambuco;Joris Winderickx

  • Prolonged selection in aerobic, glucose-limited chemostat cultures of Saccharomyces cerevisiae causes a partial loss of glycolytic capacity.

    Mickel L. A. Jansen;Jasper A. Diderich;Mlawule Mashego;Adham Hassane

Frequent Co-Authors

Jack T. Pronk
Jack T. Pronk Delft University of Technology
Jean-Marc Daran
Jean-Marc Daran Delft University of Technology
Nick Wierckx
Nick Wierckx Forschungszentrum Jülich
Stefan Hohmann
Stefan Hohmann Chalmers University of Technology
Antonius J. A. van Maris
Antonius J. A. van Maris Royal Institute of Technology
Hans V. Westerhoff
Hans V. Westerhoff Vrije Universiteit Amsterdam
Lodewyk F. A. Wessels
Lodewyk F. A. Wessels Antoni van Leeuwenhoek Hospital
Barbara M. Bakker
Barbara M. Bakker University Medical Center Groningen

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