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Yuji Nagata

Yuji Nagata

Tohoku University
Japan

D-Index & Metrics

Discipline name D-Index World Ranking Current World Ranking National Ranking Current National Ranking Publications Citations
Biology and Biochemistry 55 15289 14034 1081 1008 204 8129

Yuji Nagata publications per year

The chart shows the history of publications by Yuji Nagata between 1974 and 2025, highlighting the no. of papers published in each year and offering an overview of the publication velocity of this scholar. Yuji Nagata published across 52 years, from 1974 to 2025, averaging 4.5 papers a year. Output peaked at 19 publications in 2007. 11 of the 235 publications appeared in the last two years.

No. of publications
5 10 15
Bar chart. Horizontal axis: year, 1974 to 2025. Vertical axis: number of publications, 0 to 19. Peak 19 publications in 2007. 1974: 1 publication 1975: 0 publications 1976: 0 publications 1977: 0 publications 1978: 0 publications 1979: 0 publications 1980: 0 publications 1981: 0 publications 1982: 0 publications 1983: 0 publications 1984: 0 publications 1985: 0 publications 1986: 0 publications 1987: 0 publications 1988: 0 publications 1989: 1 publication 1990: 0 publications 1991: 1 publication 1992: 0 publications 1993: 5 publications 1994: 3 publications 1995: 1 publication 1996: 1 publication 1997: 3 publications 1998: 3 publications 1999: 7 publications 2000: 8 publications 2001: 10 publications 2002: 5 publications 2003: 9 publications 2004: 3 publications 2005: 13 publications 2006: 17 publications 2007: 19 publications 2008: 12 publications 2009: 5 publications 2010: 16 publications 2011: 7 publications 2012: 7 publications 2013: 8 publications 2014: 10 publications 2015: 11 publications 2016: 9 publications 2017: 4 publications 2018: 2 publications 2019: 5 publications 2020: 6 publications 2021: 1 publication 2022: 5 publications 2023: 6 publications 2024: 8 publications 2025: 3 publications
1974 2025

235 publications in total across all disciplines

View publications per year as a table
Yuji Nagata: publications per year, 1974 to 2025
Year Publications
1974 1
1975 0
1976 0
1977 0
1978 0
1979 0
1980 0
1981 0
1982 0
1983 0
1984 0
1985 0
1986 0
1987 0
1988 0
1989 1
1990 0
1991 1
1992 0
1993 5
1994 3
1995 1
1996 1
1997 3
1998 3
1999 7
2000 8
2001 10
2002 5
2003 9
2004 3
2005 13
2006 17
2007 19
2008 12
2009 5
2010 16
2011 7
2012 7
2013 8
2014 10
2015 11
2016 9
2017 4
2018 2
2019 5
2020 6
2021 1
2022 5
2023 6
2024 8
2025 3
Total 235
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Yuji Nagata publication distribution in Biology and Biochemistry in 2026

The chart shows the distribution of publications by all Research.com ranked scientists in the field of Biology and Biochemistry in 2026. The highlighted bar marks where Yuji Nagata sits on this spectrum.

No. of scientists
200 400 600 800
Bar chart with 100 bars. Horizontal axis: publications, 47–56 to 1,028+. Vertical axis: number of scientists, 0 to 980. Most scientists, 980, have 127–136 publications. The last bar groups every scientist with 1,028 publications or more. The highlighted bar, 197–206 publications, is where this scientist sits. 47–56 publications: 8 scientists 57–66 publications: 35 scientists 67–76 publications: 106 scientists 77–86 publications: 231 scientists 87–96 publications: 413 scientists 97–106 publications: 546 scientists 107–116 publications: 704 scientists 117–126 publications: 848 scientists 127–136 publications: 980 scientists 137–146 publications: 942 scientists 147–156 publications: 969 scientists 157–166 publications: 949 scientists 167–176 publications: 951 scientists 177–186 publications: 915 scientists 187–196 publications: 787 scientists 197–206 publications: 840 scientists 207–216 publications: 733 scientists 217–226 publications: 708 scientists 227–236 publications: 651 scientists 237–246 publications: 605 scientists 247–256 publications: 510 scientists 257–266 publications: 524 scientists 267–276 publications: 434 scientists 277–286 publications: 417 scientists 287–296 publications: 350 scientists 297–306 publications: 363 scientists 307–316 publications: 315 scientists 317–326 publications: 296 scientists 327–336 publications: 261 scientists 337–346 publications: 240 scientists 347–356 publications: 219 scientists 357–366 publications: 196 scientists 367–376 publications: 154 scientists 377–386 publications: 161 scientists 387–396 publications: 155 scientists 397–406 publications: 145 scientists 407–416 publications: 124 scientists 417–426 publications: 112 scientists 427–436 publications: 132 scientists 437–446 publications: 116 scientists 447–456 publications: 99 scientists 457–466 publications: 81 scientists 467–476 publications: 91 scientists 477–486 publications: 80 scientists 487–496 publications: 80 scientists 497–506 publications: 59 scientists 507–516 publications: 36 scientists 517–526 publications: 46 scientists 527–536 publications: 54 scientists 537–546 publications: 44 scientists 547–556 publications: 43 scientists 557–566 publications: 43 scientists 567–576 publications: 42 scientists 577–586 publications: 25 scientists 587–596 publications: 34 scientists 597–606 publications: 23 scientists 607–616 publications: 33 scientists 617–626 publications: 31 scientists 627–636 publications: 27 scientists 637–646 publications: 25 scientists 647–656 publications: 28 scientists 657–666 publications: 34 scientists 667–676 publications: 18 scientists 677–686 publications: 16 scientists 687–696 publications: 10 scientists 697–706 publications: 12 scientists 707–716 publications: 21 scientists 717–726 publications: 12 scientists 727–736 publications: 12 scientists 737–746 publications: 10 scientists 747–756 publications: 7 scientists 757–766 publications: 13 scientists 767–776 publications: 15 scientists 777–786 publications: 13 scientists 787–796 publications: 9 scientists 797–806 publications: 9 scientists 807–816 publications: 7 scientists 817–826 publications: 4 scientists 827–836 publications: 9 scientists 837–846 publications: 7 scientists 847–856 publications: 3 scientists 857–866 publications: 5 scientists 867–876 publications: 5 scientists 877–886 publications: 11 scientists 887–896 publications: 3 scientists 897–906 publications: 4 scientists 907–916 publications: 7 scientists 917–926 publications: 5 scientists 927–936 publications: 6 scientists 937–946 publications: 6 scientists 947–956 publications: 3 scientists 957–966 publications: 7 scientists 967–976 publications: 2 scientists 977–986 publications: 2 scientists 987–996 publications: 1 scientist 997–1,006 publications: 5 scientists 1,007–1,016 publications: 2 scientists 1,017–1,026 publications: 2 scientists 1,027 publications: 1 scientist 1,028+ publications: 100 scientists
47–56 publications 1,028+

This scientist: 204 publications — 51st percentile

51% of scientists in this discipline score the same or lower.

The last bar groups every scientist with 1,028 publications or more.

View publications distribution as a table
Number of Biology and Biochemistry scientists by publication count, Research.com 2026 ranking edition. Based on 19,587 ranked scientists.
Publications Scientists This scientist
47–56 8
57–66 35
67–76 106
77–86 231
87–96 413
97–106 546
107–116 704
117–126 848
127–136 980
137–146 942
147–156 969
157–166 949
167–176 951
177–186 915
187–196 787
197–206 840 204
207–216 733
217–226 708
227–236 651
237–246 605
247–256 510
257–266 524
267–276 434
277–286 417
287–296 350
297–306 363
307–316 315
317–326 296
327–336 261
337–346 240
347–356 219
357–366 196
367–376 154
377–386 161
387–396 155
397–406 145
407–416 124
417–426 112
427–436 132
437–446 116
447–456 99
457–466 81
467–476 91
477–486 80
487–496 80
497–506 59
507–516 36
517–526 46
527–536 54
537–546 44
547–556 43
557–566 43
567–576 42
577–586 25
587–596 34
597–606 23
607–616 33
617–626 31
627–636 27
637–646 25
647–656 28
657–666 34
667–676 18
677–686 16
687–696 10
697–706 12
707–716 21
717–726 12
727–736 12
737–746 10
747–756 7
757–766 13
767–776 15
777–786 13
787–796 9
797–806 9
807–816 7
817–826 4
827–836 9
837–846 7
847–856 3
857–866 5
867–876 5
877–886 11
887–896 3
897–906 4
907–916 7
917–926 5
927–936 6
937–946 6
947–956 3
957–966 7
967–976 2
977–986 2
987–996 1
997–1,006 5
1,007–1,016 2
1,017–1,026 2
1,027 1
1,028+ 100
Download as CSV

Yuji Nagata D-index placement in Biology and Biochemistry in 2026

The chart shows the D-index (discipline H-index) distribution of Biology and Biochemistry scientists ranked by Research.com in 2026. The highlighted bar marks where Yuji Nagata sits on this spectrum.

No. of scientists
250 500 750 1,000 1,250
Bar chart with 65 bars. Horizontal axis: D-Index, 40–41 to 167+. Vertical axis: number of scientists, 0 to 1,253. Most scientists, 1,253, have 58–59 D-Index. The last bar groups every scientist with 167 D-Index or more. The highlighted bar, 54–55 D-Index, is where this scientist sits. 40–41 D-Index: 80 scientists 42–43 D-Index: 183 scientists 44–45 D-Index: 316 scientists 46–47 D-Index: 504 scientists 48–49 D-Index: 718 scientists 50–51 D-Index: 899 scientists 52–53 D-Index: 1,025 scientists 54–55 D-Index: 1,149 scientists 56–57 D-Index: 1,235 scientists 58–59 D-Index: 1,253 scientists 60–61 D-Index: 1,162 scientists 62–63 D-Index: 1,130 scientists 64–65 D-Index: 1,031 scientists 66–67 D-Index: 897 scientists 68–69 D-Index: 814 scientists 70–71 D-Index: 714 scientists 72–73 D-Index: 709 scientists 74–75 D-Index: 596 scientists 76–77 D-Index: 512 scientists 78–79 D-Index: 473 scientists 80–81 D-Index: 412 scientists 82–83 D-Index: 373 scientists 84–85 D-Index: 358 scientists 86–87 D-Index: 285 scientists 88–89 D-Index: 273 scientists 90–91 D-Index: 227 scientists 92–93 D-Index: 208 scientists 94–95 D-Index: 193 scientists 96–97 D-Index: 153 scientists 98–99 D-Index: 157 scientists 100–101 D-Index: 148 scientists 102–103 D-Index: 120 scientists 104–105 D-Index: 113 scientists 106–107 D-Index: 100 scientists 108–109 D-Index: 86 scientists 110–111 D-Index: 67 scientists 112–113 D-Index: 71 scientists 114–115 D-Index: 73 scientists 116–117 D-Index: 64 scientists 118–119 D-Index: 53 scientists 120–121 D-Index: 60 scientists 122–123 D-Index: 54 scientists 124–125 D-Index: 43 scientists 126–127 D-Index: 38 scientists 128–129 D-Index: 49 scientists 130–131 D-Index: 26 scientists 132–133 D-Index: 18 scientists 134–135 D-Index: 23 scientists 136–137 D-Index: 32 scientists 138–139 D-Index: 32 scientists 140–141 D-Index: 27 scientists 142–143 D-Index: 19 scientists 144–145 D-Index: 22 scientists 146–147 D-Index: 12 scientists 148–149 D-Index: 16 scientists 150–151 D-Index: 14 scientists 152–153 D-Index: 10 scientists 154–155 D-Index: 13 scientists 156–157 D-Index: 10 scientists 158–159 D-Index: 7 scientists 160–161 D-Index: 9 scientists 162–163 D-Index: 13 scientists 164–165 D-Index: 4 scientists 166 D-Index: 4 scientists 167+ D-Index: 98 scientists
40–41 D-Index 167+

This scientist: 55 D-Index — 25th percentile

25% of scientists in this discipline score the same or lower.

The last bar groups every scientist with 167 D-Index or more.

View D-Index distribution as a table
Number of Biology and Biochemistry scientists by D-index, Research.com 2026 ranking edition. Based on 19,587 ranked scientists.
D-Index Scientists This scientist
40–41 80
42–43 183
44–45 316
46–47 504
48–49 718
50–51 899
52–53 1,025
54–55 1,149 55
56–57 1,235
58–59 1,253
60–61 1,162
62–63 1,130
64–65 1,031
66–67 897
68–69 814
70–71 714
72–73 709
74–75 596
76–77 512
78–79 473
80–81 412
82–83 373
84–85 358
86–87 285
88–89 273
90–91 227
92–93 208
94–95 193
96–97 153
98–99 157
100–101 148
102–103 120
104–105 113
106–107 100
108–109 86
110–111 67
112–113 71
114–115 73
116–117 64
118–119 53
120–121 60
122–123 54
124–125 43
126–127 38
128–129 49
130–131 26
132–133 18
134–135 23
136–137 32
138–139 32
140–141 27
142–143 19
144–145 22
146–147 12
148–149 16
150–151 14
152–153 10
154–155 13
156–157 10
158–159 7
160–161 9
162–163 13
164–165 4
166 4
167+ 98
Download as CSV

Overview

Yuji Nagata is affiliated with Tohoku University in Japan. Their research primarily spans the fields of Environmental Science and Biochemistry, Genetics and Molecular Biology. Within these fields, they have a significant focus on Molecular Biology, Ecology, Pollution, Genetics, and Health, Toxicology and Mutagenesis.

The scientist's research topics cover a variety of specialized areas including microbial bioremediation and biosurfactants, microbial community ecology and physiology, bacteriophages and microbial interactions, bacterial genetics and biotechnology, toxic organic pollutants impact, pesticide and herbicide environmental studies, and metal extraction and bioleaching.

Yuji Nagata has published in several academic venues, with frequent contributions to Bioscience Biotechnology and Biochemistry, Scientific Reports, Microbiology Spectrum, Research Square, and bioRxiv. Their recent notable papers include:

  • "Transcriptome Analysis of Zygotic Induction During Conjugative Transfer of Plasmid RP4," 2020, Frontiers in Microbiology
  • "Host range of strand-biased circularizing integrative elements: a new class of mobile DNA elements nesting in Gammaproteobacteria," 2023, Mobile DNA
  • "Reconstruction of a Soil Microbial Network Induced by Stress Temperature," 2022, Microbiology Spectrum
  • "Special Issue: Microbial Degradation of Xenobiotics," 2020, Microorganisms
  • "Long-term changes and effect of pterygium size on corneal topographic irregularity after recurrent pterygium surgery," 2020, Scientific Reports

Collaborations play a role in their research output, with frequent coauthors including Yoshiyuki Ohtsubo, Kouhei Kishida, Masataka Tsuda, Hiromi Kato, and Leonardo Stari.

Best Publications

  • Design and experimental application of a novel non-degenerate universal primer set that amplifies prokaryotic 16S rRNA genes with a low possibility to amplify eukaryotic rRNA genes.

    Hiroshi Mori;Fumito Maruyama;Hiromi Kato;Atsushi Toyoda

  • Redesigning Dehalogenase Access Tunnels as a Strategy for Degrading an Anthropogenic Substrate.

    Martina Pavlova;Martin Klvana;Zbynek Prokop;Radka Chaloupkova

  • GenomeMatcher: A graphical user interface for DNA sequence comparison

    Yoshiyuki Ohtsubo;Wakako Ikeda-Ohtsubo;Yuji Nagata;Masataka Tsuda

  • Aerobic degradation of lindane (γ-hexachlorocyclohexane) in bacteria and its biochemical and molecular basis

    Yuji Nagata;Ryo Endo;Michihiro Ito;Yoshiyuki Ohtsubo

  • Cloning and sequencing of a dehalogenase gene encoding an enzyme with hydrolase activity involved in the degradation of gamma-hexachlorocyclohexane in Pseudomonas paucimobilis.

    Y Nagata;T Nariya;R Ohtomo;M Fukuda

  • Modification of activity and specificity of haloalkane dehalogenase from Sphingomonas paucimobilis UT26 by engineering of its entrance tunnel

    Radka Chaloupková;Jana Sýkorová;Zbyňek Prokop;Andrea Jesenská

  • Molecular cloning of a Pseudomonas paucimobilis gene encoding a 17-kilodalton polypeptide that eliminates HCl molecules from gamma-hexachlorocyclohexane.

    R Imai;Y Nagata;M Fukuda;M Takagi

  • Purification and characterization of a haloalkane dehalogenase of a new substrate class from a gamma-hexachlorocyclohexane-degrading bacterium, Sphingomonas paucimobilis UT26.

    Yuji Nagata;Keisuke Miyauchi;Jiri Damborsky;Katka Manova

  • Cloning and Sequencing of a Novel meta-Cleavage Dioxygenase Gene Whose Product Is Involved in Degradation of γ-Hexachlorocyclohexane in Sphingomonas paucimobilis

    Keisuke Miyauchi;Yugo Adachi;Yuji Nagata;Masamichi Takagi

  • Complete genome sequence of Acidovorax sp. strain KKS102, a polychlorinated-biphenyl degrader.

    Yoshiyuki Ohtsubo;Fumito Maruyama;Hisayuki Mitsui;Yuji Nagata

  • Cloning and Sequencing of a 2,5-Dichlorohydroquinone Reductive Dehalogenase Gene Whose Product Is Involved in Degradation of γ-Hexachlorocyclohexane by Sphingomonas paucimobilis

    Keisuke Miyauchi;Seug Kyo Suh;Yuji Nagata;Masamichi Takagi

  • Strategies for bioremediation of polychlorinated biphenyls

    Yoshiyuki Ohtsubo;Toshiaki Kudo;Masataka Tsuda;Yuji Nagata

  • Enantioselectivity of Haloalkane Dehalogenases and its Modulation by Surface Loop Engineering

    Zbynek Prokop;Yukari Sato;Jan Brezovsky;Tomas Mozga

  • Catalytic mechanism of the haloalkane dehalogenase LinB from Sphingomonas paucimobilis UT26

    Zbyněk Prokop;Marta Monincová;Radka Chaloupková;Martin Klvaňa

  • Nucleotide sequence and functional analysis of the meta-cleavage pathway involved in biphenyl and polychlorinated biphenyl degradation in Pseudomonas sp. strain KKS102.

    Y Kikuchi;Y Yasukochi;Y Nagata;M Fukuda

  • Crystal Structure of Haloalkane Dehalogenase LinB from Sphingomonas paucimobilis UT26 at 0.95 Å Resolution: Dynamics of Catalytic Residues

    Aaron J. Oakley;Martin Klvaňa;Michal Otyepka;Yuji Nagata

  • Two different types of dehalogenases, LinA and LinB, involved in γ- hexachlorocyclohexane degradation in Sphingomonas paucimobilis UT26 are localized in the periplasmic space without molecular processing

    Yuji Nagata;Akiko Futamura;Keisuke Miyauchi;Masamichi Takagi

  • Isolation and characterization of naphthalene-catabolic genes and plasmids from oil-contaminated soil by using two cultivation-independent approaches

    Akira Ono;Ryo Miyazaki;Masahiro Sota;Masahiro Sota;Yoshiyuki Ohtsubo

  • Two rhizobial strains, Mesorhizobium loti MAFF303099 and Bradyrhizobium japonicum USDA110, encode haloalkane dehalogenases with novel structures and substrate specificities.

    Yukari Sato;Marta Monincova;Radka Chaloupkova;Zbynek Prokop

  • Cloning and sequencing of a 2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase gene involved in the degradation of gamma-hexachlorocyclohexane in Pseudomonas paucimobilis.

    Y Nagata;R Ohtomo;K Miyauchi;M Fukuda

Frequent Co-Authors

Masataka Tsuda
Masataka Tsuda Tohoku University
Jiri Damborsky
Jiri Damborsky Masaryk University
Masamichi Takagi
Masamichi Takagi Niigata University of Pharmacy and Applied Life Sciences
Masao Fukuda
Masao Fukuda Chubu University
Masahiro Takagi
Masahiro Takagi Kyoto Sangyo University
Ryozo Imai
Ryozo Imai National Agriculture and Food Research Organization
Rebecca C. Wade
Rebecca C. Wade Heidelberg Institute for Theoretical Studies
Asao Fujiyama
Asao Fujiyama National Institute of Genetics
Kiwamu Minamisawa
Kiwamu Minamisawa Tohoku University
Michal Otyepka
Michal Otyepka Palacký University, Olomouc

External Links

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Best Scientists Citing Yuji Nagata

Jiri Damborsky

Jiri Damborsky

Masaryk University

Publications: 94

Rup Lal

Rup Lal

University of Delhi

Publications: 50

Hideaki Nojiri

Hideaki Nojiri

University of Tokyo

Publications: 33

Dick B. Janssen

Dick B. Janssen

University of Groningen

Publications: 33

Hans-Peter E. Kohler

Hans-Peter E. Kohler

Swiss Federal Institute of Aquatic Science and Technology

Publications: 22

Hisakazu Yamane

Hisakazu Yamane

Teikyo University

Publications: 20

Akinori Ohta

Akinori Ohta

Chubu University

Publications: 20

Masao Fukuda

Masao Fukuda

Chubu University

Publications: 18

Shusei Sato

Shusei Sato

Tohoku University

Publications: 18

Jan Roelof van der Meer

Jan Roelof van der Meer

University of Lausanne

Publications: 18

Kiwamu Minamisawa

Kiwamu Minamisawa

Tohoku University

Publications: 17

Eiji Masai

Eiji Masai

Nagaoka University of Technology

Publications: 17

Dirk Springael

Dirk Springael

KU Leuven

Publications: 15

Christof Holliger

Christof Holliger

École Polytechnique Fédérale de Lausanne

Publications: 14

Masahira Hattori

Masahira Hattori

Waseda University

Publications: 13

Dietmar H. Pieper

Dietmar H. Pieper

Helmholtz Centre for Infection Research

Publications: 13

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