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D-Index & Metrics

Biology and Biochemistry

D-Index
59
Citations
27977
World Ranking
12249
National Ranking
422

Overview

Paul Stothard is affiliated with the University of Alberta in Canada and has contributed extensively to research in biochemistry, genetics, and molecular biology, as well as agricultural and biological sciences. Their work spans multiple subfields including genetics, molecular biology, agronomy and crop science, ecology, and animal science and zoology.

The scientist's research primarily addresses topics such as genetic and phenotypic traits in livestock, genetic mapping and diversity in plants and animals, genomics and phylogenetic studies, ruminant nutrition and digestive physiology, effects of environmental stressors on livestock, bacteriophages and microbial interactions, and microbial infections and disease research.

Their recent notable publications include:

  • Proksee: in-depth characterization and visualization of bacterial genomes, 2023, Nucleic Acids Research
  • PHASTEST: faster than PHASTER, better than PHAST, 2023, Nucleic Acids Research
  • Genetic architecture of quantitative traits in beef cattle revealed by genome wide association studies of imputed whole genome sequence variants: I: feed efficiency and component traits, 2020, BMC Genomics
  • Breeding for reduced methane emission and feed-efficient Holstein cows: An international response, 2021, Journal of Dairy Science
  • Genetic architecture of quantitative traits in beef cattle revealed by genome wide association studies of imputed whole genome sequence variants: II: carcass merit traits, 2020, BMC Genomics

Paul Stothard has frequently collaborated with several coauthors, reflecting a consistent research network. These collaborators include Graham Plastow, F. Miglior, Flávio S. Schenkel, Christine F. Baes, and Dagnachew Hailemariam.

Their research has been published in several recurring venues, with numerous contributions to the Journal of Animal Science, Journal of Dairy Science, Scientific Reports, Zenodo (CERN European Organization for Nuclear Research), and BMC Genomics.

Best Publications

  • DrugBank: a comprehensive resource for in silico drug discovery and exploration

    David S. Wishart;Craig Knox;An Chi Guo;Savita Shrivastava

  • HMDB: The human metabolome database

    David S. Wishart;Dan Tzur;Craig Knox;Roman Eisner

  • The sequence manipulation suite: JavaScript programs for analyzing and formatting protein and DNA sequences.

    Paul Stothard

  • The Genome Sequence of Taurine Cattle: A Window to Ruminant Biology and Evolution

    Christine G. Elsik;Christine G. Elsik;Christine G. Elsik;Ross L. Tellam;Kim C. Worley;Kim C. Worley;Richard A. Gibbs

  • The CGView Server: a comparative genomics tool for circular genomes

    Jason R. Grant;Paul Stothard

  • Circular genome visualization and exploration using CGView

    Paul Stothard;David S. Wishart

  • Whole-genome sequencing of 234 bulls facilitates mapping of monogenic and complex traits in cattle

    Hans D Daetwyler;Aurélien Capitan;Hubert Pausch;Paul Stothard

  • Genomic analyses identify distinct patterns of selection in domesticated pigs and Tibetan wild boars

    Mingzhou Li;Shilin Tian;Long Jin;Guangyu Zhou

  • Meta-analysis of genome-wide association studies for cattle stature identifies common genes that regulate body size in mammals.

    Aniek C. Bouwman;Hans D. Daetwyler;Amanda J. Chamberlain;Carla Hurtado Ponce

  • BASys: a web server for automated bacterial genome annotation.

    Gary H. Van Domselaar;Paul Stothard;Savita Shrivastava;Joseph A. Cruz

  • Defining the role of Parasutterella, a previously uncharacterized member of the core gut microbiota.

    Tingting Ju;Ji Yoon Kong;Paul Stothard;Benjamin P Willing

  • Interactive microbial genome visualization with GView

    Aaron Petkau;Matthew Stuart-Edwards;Paul Stothard;Gary Van Domselaar

  • PolySearch: a web-based text mining system for extracting relationships between human diseases, genes, mutations, drugs and metabolites

    Dean Cheng;Craig Knox;Nelson Young;Paul Stothard

  • Comparing thousands of circular genomes using the CGView comparison tool

    Jason R Grant;Adriano S Arantes;Paul Stothard

  • Whole genome linkage disequilibrium maps in cattle

    Stephanie D McKay;Robert D Schnabel;Brenda M Murdoch;Lakshmi K Matukumalli;Lakshmi K Matukumalli

  • The CyberCell Database (CCDB): a comprehensive, self‐updating, relational database to coordinate and facilitate in silico modeling of Escherichia coli

    Shan Sundararaj;Anchi Guo;Bahram Habibi-Nazhad;Melania Rouani

  • Visualizing and comparing circular genomes using the CGView family of tools

    Paul Stothard;Jason R. Grant;Gary H. Van Domselaar

  • Whole genome resequencing of black Angus and Holstein cattle for SNP and CNV discovery.

    Paul Stothard;Jung-Woo Choi;Urmila Basu;Jennifer M Sumner-Thomson

  • The Genome of Polaromonas sp. Strain JS666: Insights into the Evolution of a Hydrocarbon- and Xenobiotic-Degrading Bacterium, and Features of Relevance to Biotechnology

    Timothy E. Mattes;Anne K. Alexander;Paul M. Richardson;A. Christine Munk

  • PlasMapper: a web server for drawing and auto-annotating plasmid maps

    Xiaoli Dong;Paul Stothard;Ian J. Forsythe;David S. Wishart

Frequent Co-Authors

Graham Plastow
Graham Plastow University of Alberta
Stephen S. Moore
Stephen S. Moore University of Queensland
Changxi Li
Changxi Li Agriculture and Agriculture-Food Canada
David S. Wishart
David S. Wishart University of Alberta
Flavio S Schenkel
Flavio S Schenkel University of Guelph
Le Luo Guan
Le Luo Guan University of Alberta
John A. Basarab
John A. Basarab University of Alberta
Stephen P. Miller
Stephen P. Miller University of New England
Filippo Miglior
Filippo Miglior University of Guelph
Christopher K. Tuggle
Christopher K. Tuggle Iowa State University

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