Shigehiko Kanaya

Overview

Best Publications

• Global landscape of protein complexes in the yeast Saccharomyces cerevisiae

  Nevan J. Krogan;Gerard Cagney;Gerard Cagney;Haiyuan Yu;Gouqing Zhong

  3470
  Citations

• MassBank: a public repository for sharing mass spectral data for life sciences.

  Hisayuki Horai;Masanori Arita;Masanori Arita;Shigehiko Kanaya;Yoshito Nihei

  2658
  Citations

• Integration of transcriptomics and metabolomics for understanding of global responses to nutritional stresses in Arabidopsis thaliana

  Masami Yokota Hirai;Mitsuru Yano;Dayan B. Goodenowe;Shigehiko Kanaya

  881
  Citations

• Sequence-specific error profile of Illumina sequencers

  Kensuke Nakamura;Taku Oshima;Takuya Morimoto;Shun Ikeda

  739
  Citations

• KNApSAcK family databases: integrated metabolite-plant species databases for multifaceted plant research.

  Farit Mochamad Afendi;Taketo Okada;Mami Yamazaki;Aki Hirai-Morita

  706
  Citations

• Studies of codon usage and tRNA genes of 18 unicellular organisms and quantification of Bacillus subtilis tRNAs: gene expression level and species-specific diversity of codon usage based on multivariate analysis.

  Shigehiko Kanaya;Yuko Yamada;Yoshihiro Kudo;Toshimichi Ikemura

  610
  Citations

• Elucidation of Gene-to-Gene and Metabolite-to-Gene Networks in Arabidopsis by Integration of Metabolomics and Transcriptomics

  Masami Yokota Hirai;Marion Klein;Yuuta Fujikawa;Mitsuru Yano

  572
  Citations

• Development and implementation of an algorithm for detection of protein complexes in large interaction networks

  Altaf-Ul-Amin;Yoko Shinbo;Kenji Mihara;Ken Kurokawa

  561
  Citations

• Large-scale identification of protein-protein interaction of Escherichia coli K-12.

  Mohammad Arifuzzaman;Maki Maeda;Aya Itoh;Kensaku Nishikata

  511
  Citations

• Transcriptome analysis of all two‐component regulatory system mutants of Escherichia coli K‐12

  Taku Oshima;Hirofumi Aiba;Yasushi Masuda;Shigehiko Kanaya

  465
  Citations

• The R‐type pyocin of Pseudomonas aeruginosa is related to P2 phage, and the F‐type is related to lambda phage

  Keisuke Nakayama;Kayoko Takashima;Hiroshi Ishihara;Tomoyuki Shinomiya

  439
  Citations

• Codon usage and tRNA genes in eukaryotes: correlation of codon usage diversity with translation efficiency and with CG-dinucleotide usage as assessed by multivariate analysis.

  Shigehiko Kanaya;Yuko Yamada;Makoto Kinouchi;Yoshihiro Kudo

  391
  Citations

• Codon usage tabulated from the international DNA sequence databases

  Yasukazu Nakamura;Takashi Gojobori;Toshimichi Ikemura

  389
  Citations

• Informatics for Unveiling Hidden Genome Signatures

  Takashi Abe;Shigehiko Kanaya;Makoto Kinouchi;Yuta Ichiba

  370
  Citations

• Metabolite annotations based on the integration of mass spectral information

  Yoko Iijima;Yukiko Nakamura;Yoshiyuki Ogata;Ken’ichi Tanaka

  332
  Citations

• Analysis of codon usage diversity of bacterial genes with a self-organizing map (SOM): characterization of horizontally transferred genes with emphasis on the E. coli O157 genome

  Shigehiko Kanaya;Makoto Kinouchi;Takashi Abe;Yoshihiro Kudo

  274
  Citations

• Enhanced Recombinant Protein Productivity by Genome Reduction in Bacillus subtilis

  Takuya Morimoto;Ryosuke Kadoya;Ryosuke Kadoya;Keiji Endo;Masatoshi Tohata

  233
  Citations

• KNApSAcK: A Comprehensive Species-Metabolite Relationship Database

  Y. Shinbo;Y. Nakamura;Y. Nakamura;M. Altaf-Ul-Amin;H. Asahi

  222
  Citations

• The complete nucleotide sequence of φCTX, a cytotoxin‐converting phage of Pseudomonas aeruginosa: implications for phage evolution and horizontal gene transfer via bacteriophages

  Keisuke Nakayama;Shigehiko Kanaya;Makoto Ohnishi;Yoshiro Terawaki

  218
  Citations

• Genome-wide binding profiles of the Bacillus subtilis transition state regulator AbrB and its homolog Abh reveals their interactive role in transcriptional regulation.

  Onuma Chumsakul;Hiroki Takahashi;Taku Oshima;Takahiro Hishimoto

  182
  Citations