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Genetics

D-Index
57
Citations
20844
World Ranking
3361
National Ranking
166

Overview

Christophe Klopp is affiliated with INRAE (Institut national de recherche pour l'agriculture, l'alimentation et l'environnement) in France, contributing extensively to the fields of Biochemistry, Genetics, and Molecular Biology as well as Agricultural and Biological Sciences.

Their research portfolio spans numerous subfields, including Genetics, Molecular Biology, Plant Science, Physiology, and Ecology. This broad expertise informs a focus on topics such as Genetic and Clinical Aspects of Sex Determination and Chromosomal Abnormalities, Genomics and Phylogenetic Studies, Reproductive Biology and Impacts on Aquatic Species, Genetic and Phenotypic Traits in Livestock, Chromosomal and Genetic Variations, Genetic Diversity and Population Structure, and Legume Nitrogen Fixing Symbiosis.

Christophe Klopp has an extensive publication record with notable papers including:

  • The sterlet sturgeon genome sequence and the mechanisms of segmental rediploidization (2020, Nature Ecology & Evolution)
  • Characterization of a Y-specific duplication/insertion of the anti-Mullerian hormone type II receptor gene based on a chromosome-scale genome assembly of yellow perch, Perca flavescens (2020, Molecular Ecology Resources)
  • A 180 Myr-old female-specific genome region in sturgeon reveals the oldest known vertebrate sex determining system with undifferentiated sex chromosomes (2021, Philosophical Transactions of the Royal Society B Biological Sciences)
  • Contrasting Gene Decay in Subterranean Vertebrates: Insights from Cavefishes and Fossorial Mammals (2020, Molecular Biology and Evolution)
  • RNA-Seq Data for Reliable SNP Detection and Genotype Calling: Interest for Coding Variant Characterization and Cis-Regulation Analysis by Allele-Specific Expression in Livestock Species (2021, Frontiers in Genetics)

Their frequent coauthors include Carole Iampietro, Cédric Cabau, Yann Guiguen, Céline Lopez-Roques, and John H. Postlethwait, reflecting collaborative work across multiple projects.

Christophe Klopp's research is regularly published in venues such as bioRxiv (Cold Spring Harbor Laboratory), Scientific Reports, Nature Communications, Faculty of 1000 Research Ltd, and Molecular Ecology Resources, where they have contributed many articles.

Best Publications

  • The tomato genome sequence provides insights into fleshy fruit evolution

    Shusei Sato;Satoshi Tabata;Hideki Hirakawa;Erika Asamizu

  • Whole-genome sequencing of 234 bulls facilitates mapping of monogenic and complex traits in cattle

    Hans D Daetwyler;Aurélien Capitan;Hubert Pausch;Paul Stothard

  • The rainbow trout genome provides novel insights into evolution after whole-genome duplication in vertebrates

    Camille Berthelot;Frédéric Brunet;Domitille Chalopin;Amélie Juanchich

  • The BioMart community portal: an innovative alternative to large, centralized data repositories

    Damian Smedley;Syed Haider;Steffen Durinck;Luca Pandini

  • jvenn: an interactive Venn diagram viewer.

    Philippe Bardou;Jérôme Mariette;Frédéric Escudié;Christophe Djemiel

  • Metabolic adaptation to a high-fat diet is associated with a change in the gut microbiota

    Matteo Serino;Elodie Luche;Sandra Grès;Audrey Baylac

  • D-GENIES: dot plot large genomes in an interactive, efficient and simple way.

    Floréal Cabanettes;Christophe Klopp

  • An immune-related gene evolved into the master sex-determining gene in rainbow trout, Oncorhynchus mykiss.

    Ayaka Yano;René Guyomard;Barbara Nicol;Elodie Jouanno

  • Oak genome reveals facets of long lifespan.

    Christophe Plomion;Jean-Marc Aury;Joëlle Amselem;Thibault Leroy

  • Involvement of tissue bacteria in the onset of diabetes in humans: evidence for a concept

    J. Amar;M. Serino;C. Lange;C. Chabo

  • Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database

    Jérémy Pasquier;Cédric Cabau;Thuy Thao Vi Nguyen;Elodie Jouanno

  • Microbial ecology of the rumen evaluated by 454 GS FLX pyrosequencing is affected by starch and oil supplementation of diets.

    Asma Zened;Asma Zened;Sylvie Combes;Sylvie Combes;Laurent Cauquil;Laurent Cauquil;Jérôme Mariette

  • Functional metagenomics to mine the human gut microbiome for dietary fiber catabolic enzymes

    Lena Tasse;Juliette Bercovici;Sandra Pizzut-Serin;Patrick Robe

  • Design and characterization of a 52K SNP chip for goats.

    Gwenola Tosser-Klopp;Philippe Bardou;Olivier Bouchez;Cédric Cabau

  • Detection of haplotypes associated with prenatal death in dairy cattle and identification of deleterious mutations in GART, SHBG and SLC37A2.

    Sébastien Fritz;Aurelien Capitan;Anis Djari;Sabrina C. Rodriguez

  • Reconstructing the genome of the most recent common ancestor of flowering plants

    Florent Murat;Alix Armero;Caroline Pont;Christophe Klopp

  • The sterlet sturgeon genome sequence and the mechanisms of segmental rediploidization

    Kang Du;Matthias Stöck;Susanne Kneitz;Christophe Klopp;Christophe Klopp

  • Generation and analysis of a 29,745 unique Expressed Sequence Tags from the Pacific oyster (Crassostrea gigas) assembled into a publicly accessible database: the GigasDatabase

    Elodie Fleury;Arnaud Huvet;Christophe Lelong;Julien de Lorgeril

  • Decoding the oak genome: public release of sequence data, assembly, annotation and publication strategies

    Christophe Plomion;Christophe Plomion;Jean-Marc Aury;Joëlle Amselem;Tina Alaeitabar

  • Identification of the master sex determining gene in Northern pike (Esox lucius) reveals restricted sex chromosome differentiation

    Qiaowei Pan;Romain Feron;Romain Feron;Ayaka Yano;René Guyomard

Frequent Co-Authors

Manfred Schartl
Manfred Schartl University of Würzburg
Yann Guiguen
Yann Guiguen INRAE : Institut national de recherche pour l'agriculture, l'alimentation et l'environnement
Frédérique Pitel
Frédérique Pitel INRAE : Institut national de recherche pour l'agriculture, l'alimentation et l'environnement
Christophe Plomion
Christophe Plomion University of Bordeaux
John H. Postlethwait
John H. Postlethwait University of Oregon
David Gourichon
David Gourichon INRAE : Institut national de recherche pour l'agriculture, l'alimentation et l'environnement
Alain Vignal
Alain Vignal Federal University of Toulouse Midi-Pyrénées
Antoine Kremer
Antoine Kremer University of Bordeaux
Didier Boichard
Didier Boichard University of Paris-Saclay
Catherine Beaumont
Catherine Beaumont INRAE : Institut national de recherche pour l'agriculture, l'alimentation et l'environnement

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