Alison E. Mather

Best Publications

• ARIBA: rapid antimicrobial resistance genotyping directly from sequencing reads

  Martin Hunt;Alison E Mather;Alison E Mather;Leonor Sánchez-Busó;Andrew J Page

  754
  Citations

• Phylogeographical analysis of the dominant multidrug-resistant H58 clade of Salmonella Typhi identifies inter- and intracontinental transmission events

  Vanessa K. Wong;Vanessa K. Wong;Stephen Baker;Stephen Baker;Stephen Baker;Derek J. Pickard;Julian Parkhill

  530
  Citations

• A genomic portrait of the emergence, evolution, and global spread of a methicillin-resistant Staphylococcus aureus pandemic

  Matthew T.G. Holden;Li Yang Hsu;Li Yang Hsu;Kevin Kurt;Lucy A. Weinert;Lucy A. Weinert

  515
  Citations

• Dense genomic sampling identifies highways of pneumococcal recombination

  Claire Chewapreecha;Simon R Harris;Nicholas J Croucher;Claudia Turner;Claudia Turner;Claudia Turner

  427
  Citations

• Distinguishable epidemics of multidrug-resistant Salmonella typhimurium DT104 in different hosts

  A. E. Mather;S. W. J. Reid;D. J. Maskell;J. Parkhill

  392
  Citations

• Comprehensive Identification of Single Nucleotide Polymorphisms Associated with Beta-lactam Resistance within Pneumococcal Mosaic Genes

  Claire Chewapreecha;Pekka Marttinen;Pekka Marttinen;Nicholas J. Croucher;Susannah J. Salter

  237
  Citations

• Distinct Salmonella Enteritidis lineages associated with enterocolitis in high-income settings and invasive disease in low-income settings

  Nicholas A. Feasey;James Hadfield;Karen Helena Keddy;Timothy J Dallman

  223
  Citations

• A current perspective on antimicrobial resistance in Southeast Asia.

  Raphaël M Zellweger;Juan Carrique-Mas;Direk Limmathurotsakul;Nicholas P J Day

  215
  Citations

• Global and regional dissemination and evolution of Burkholderia pseudomallei.

  Claire Chewapreecha;Claire Chewapreecha;Claire Chewapreecha;Matthew T. G. Holden;Matthew T. G. Holden;Minna Vehkala;Niko Välimäki

  191
  Citations

• An extended genotyping framework for Salmonella enterica serovar Typhi, the cause of human typhoid

  Vanessa K Wong;Stephen Baker;Thomas R Connor;Derek Pickard

  187
  Citations

• Microevolution of Monophasic Salmonella Typhimurium during Epidemic, United Kingdom, 2005-2010.

  Liljana Petrovska;Alison E. Mather;Alison E. Mather;Manal AbuOun;Priscilla Branchu

  181
  Citations

• Integrated view of Vibrio cholerae in the Americas

  Daryl Domman;Marie-Laure Quilici;Matthew J. Dorman;Elisabeth Njamkepo

  180
  Citations

• ARIBA: rapid antimicrobial resistance genotyping directly from sequencing reads

  Martin Hunt;Alison E Mather;Leonor Sánchez-Busó;Andrew J Page

  155
  Citations

• The effect of genetic structure on molecular dating and tests for temporal signal.

  Gemma G. R. Murray;Fang Wang;Ewan M. Harrison;Gavin K. Paterson;Gavin K. Paterson

  134
  Citations

• Anti-inflammatories in Alzheimer's disease-potential therapy or spurious correlate?

  Jack Rivers-Auty;Jack Rivers-Auty;Jack Rivers-Auty;Alison E Mather;Alison E Mather;Ruth Peters;Ruth Peters;Catherine B Lawrence;Catherine B Lawrence

  124
  Citations

• CoronaHiT: high-throughput sequencing of SARS-CoV-2 genomes.

  Dave J. Baker;Alp Aydin;Thanh Le-Viet;Gemma L. Kay

  123
  Citations

• Salmonella enterica Serotype 4,[5],12:i:- in Swine in the United States Midwest: An Emerging Multidrug-Resistant Clade.

  Ehud Elnekave;Samuel L Hong;Alison E. Mather;Dave Boxrud

  117
  Citations

• Global phylogeography and evolutionary history of Shigella dysenteriae type 1.

  Elisabeth Njamkepo;Nizar Fawal;Alicia Tran-Dien;Jane Hawkey

  90
  Citations

• New Variant of Multidrug-Resistant Salmonella enterica Serovar Typhimurium Associated with Invasive Disease in Immunocompromised Patients in Vietnam

  Alison E Mather;Tu Le Thi Phuong;Tu Le Thi Phuong;Yunfeng Gao;Simon Clare

  82
  Citations

• Invasive Non-typhoidal Salmonella Infections in Asia: Clinical Observations, Disease Outcome and Dominant Serovars from an Infectious Disease Hospital in Vietnam.

  Nguyen Phu Huong Lan;Tu Le Thi Phuong;Hien Nguyen Huu;Le Thuy;Le Thuy

  78
  Citations