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BMC Bioinformatics
H-index 45

BMC Bioinformatics

1471-2105

Published by: Springer

https://bmcbioinformatics.biomedcentral.com/

Ranking & Metrics

Discipline name Position Best Scientists Publications D-Index
Microbiology 162 39 36 13
Computer Science 179 241 325 28
Biology and Biochemistry 208 242 248 27

Additional Metrics

Number of Best Scientists*: 1001
Documents by Best Scientists*: 909
Top 100 Ranked Scientists*: 46
SCIMAGO H-index: 251
SCIMAGO SJR: 1.19
Impact Factor: 3.3

Overview

Top Research Topics at BMC Bioinformatics?

The journal investigates areas of study like DNA microarray, Computational biology, Genetics, Data mining and Artificial intelligence. While work presented in the journal provided substantial information on DNA microarray, it also covered topics in Genome, DNA sequencing and Gene expression profiling. Some problems in Gene expression profiling that were presented in the journal overlapped with concepts under Microarray and Microarray analysis techniques.

Computational biology research featured in it incorporates concerns from various other topics such as Context (language use), Bioinformatics, Genomics, Protein structure and Gene regulatory network. Research on Genetics presented in the journal focuses, in particular, on Sequence alignment, Sequence analysis, Human genome, Regulation of gene expression and Single-nucleotide polymorphism. It explores issues in Data mining which can be linked to other research areas like Software, Set (abstract data type) and Cluster analysis.

Topics in Artificial intelligence were tackled in line with various other fields like Natural language processing, Machine learning and Pattern recognition.

  • DNA microarray (49.87%)
  • Computational biology (32.80%)
  • Genetics (23.06%)

What are the most cited papers published in the journal?

  • RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome (9580 citations)
  • BLAST+: architecture and applications. (8932 citations)
  • WGCNA: an R package for weighted correlation network analysis. (8217 citations)

Research areas of the most cited articles at BMC Bioinformatics:

The most cited articles focus on DNA microarray, Computational biology, Genetics, Data mining and Artificial intelligence. The journal papers tackle topics on DNA microarray, which can potentially contribute to the wider field of Gene. The study of Computational biology in the most cited articles encompasses disciplines such as Annotation, as well as fields such as Information retrieval, all of which overlap with one another.

What topics the last edition of the journal is best known for?

  • Gene
  • DNA
  • Artificial intelligence

The previous edition focused in particular on these issues:

The journal mainly deals with areas of study such as Computational biology, DNA microarray, Artificial intelligence, Machine learning and Genome. The research on Computational biology tackled can also make contributions to studies in the areas of Context (language use), Identification (information), Annotation, Transcriptome and Metagenomics. While DNA microarray is the focus of BMC Bioinformatics, it also provided insights into the studies of Cancer, RNA-Seq and DNA sequencing.

The work on Artificial intelligence addressed in the journal expands to the thematically related Pattern recognition. Specifically, studies on Reference genome are prevalent in the Genome works discussed. The Cluster analysis study tackled is a key component of adjacent topics in the area of Data mining.

The most cited articles from the last journal are:

  • MADGAN: unsupervised medical anomaly detection GAN using multiple adjacent brain MRI slice reconstruction. (19 citations)
  • PnB Designer: a web application to design prime and base editor guide RNAs for animals and plants. (19 citations)
  • DeepDist: real-value inter-residue distance prediction with deep residual convolutional network (15 citations)

Papers citation over time

A key indicator for each journal is its effectiveness in reaching other researchers with the papers published at that venue.

The chart below presents the interquartile range (first quartile 25%, median 50% and third quartile 75%) of the number of citations of articles over time.

The top authors publishing in BMC Bioinformatics (based on the number of publications) are:

  • Luciano Milanesi (36 papers) absent at the last edition,
  • Weida Tong (35 papers) absent at the last edition,
  • Jianlin Cheng (27 papers) published 3 papers at the last edition, 1 more than at the previous edition,
  • Jonathan D. Wren (27 papers) absent at the last edition,
  • Hongyu Zhao (24 papers) absent at the last edition.

The overall trend for top authors publishing in this journal is outlined below. The chart shows the number of publications at each edition of the journal for top authors.

Only papers with recognized affiliations are considered

The top affiliations publishing in BMC Bioinformatics (based on the number of publications) are:

  • Max Planck Society (209 papers) published 3 papers at the last edition, 5 less than at the previous edition,
  • National Institutes of Health (193 papers) published 11 papers at the last edition, 3 more than at the previous edition,
  • Harvard University (192 papers) published 2 papers at the last edition, 10 less than at the previous edition,
  • Chinese Academy of Sciences (178 papers) published 16 papers at the last edition, 2 more than at the previous edition,
  • European Bioinformatics Institute (148 papers) published 4 papers at the last edition, 1 more than at the previous edition.

The overall trend for top affiliations publishing in this journal is outlined below. The chart shows the number of publications at each edition of the journal for top affiliations.

Publication chance based on affiliation

The publication chance index shows the ratio of articles published by the best research institutions in the journal edition to all articles published within that journal. The best research institutions were selected based on the largest number of articles published during all editions of the journal.

The chart below presents the percentage ratio of articles from top institutions (based on their ranking of total papers).Top affiliations were grouped by their rank into the following tiers: top 1-10, top 11-20, top 21-50, and top 51+. Only articles with a recognized affiliation are considered.

During the most recent 2021 edition, 3.65% of publications had an unrecognized affiliation. Out of the publications with recognized affiliations, 12.21% were posted by at least one author from the top 10 institutions publishing in the journal. Another 5.26% included authors affiliated with research institutions from the top 11-20 affiliations. Institutions from the 21-50 range included 9.26% of all publications and 73.26% were from other institutions.

Returning Authors Index

A very common phenomenon observed among researchers publishing scientific articles is the intentional selection of journals they have already attended in the past. In particular, it is worth analyzing the case when the authors participate in the same journal from year to year.

The Returning Authors Index presented below illustrates the ratio of authors who participated in both a given as well as the previous edition of the journal in relation to all participants in a given year.

Returning Institution Index

The graph below shows the Returning Institution Index, illustrating the ratio of institutions that participated in both a given and the previous edition of the conference in relation to all affiliations present in a given year.

The experience to innovation index

Our experience to innovation index was created to show a cross-section of the experience level of authors publishing in a journal. The index includes the authors publishing at the last edition of a journal, grouped by total number of publications throughout their academic career (P) and the total number of citations of these publications ever received (C).

The group intervals were selected empirically to best show the diversity of the authors' experiences, their labels were selected as a convenience, not as judgment. The authors were divided into the following groups:

  • Novice - P < 5 or C < 25 (the number of publications less than 5 or the number of citations less than 25),
  • Competent - P < 10 or C < 100 (the number of publications less than 10 or the number of citations less than 100),
  • Experienced - P < 25 or C < 625 (the number of publications less than 25 or the number of citations less than 625),
  • Master - P < 50 or C < 2500 (the number of publications less than 50 or the number of citations less than 2500),
  • Star - P ≥ 50 and C ≥ 2500 (both the number of publications greater than 50 and the number of citations greater than 2500).

The chart below illustrates experience levels of first authors in cases of publications with multiple authors.

Top Publications

  • CellProfiler 4: improvements in speed, utility and usability.

    David R. Stirling;Madison J. Swain-Bowden;Alice M. Lucas;Anne E. Carpenter

    (2021)
    1173 Citations
  • PnB Designer: a web application to design prime and base editor guide RNAs for animals and plants.

    Sebastian M. Siegner;Mehmet E. Karasu;Markus S. Schröder;Zacharias Kontarakis

    (2021)
    311 Citations
  • MADGAN: unsupervised medical anomaly detection GAN using multiple adjacent brain MRI slice reconstruction.

    Changhee Han;Leonardo Rundo;Kohei Murao;Tomoyuki Noguchi

    (2021)
    197 Citations
  • GPU accelerated adaptive banded event alignment for rapid comparative nanopore signal analysis

    Hasindu Gamaarachchi;Hasindu Gamaarachchi;Chun Wai Lam;Gihan Jayatilaka;Hiruna Samarakoon

    (2020)
    143 Citations
  • Prediction of liquid–liquid phase separating proteins using machine learning

    (2022)
    130 Citations
  • MethylNet: an automated and modular deep learning approach for DNA methylation analysis

    Joshua J. Levy;Alexander J. Titus;Curtis L. Petersen;Curtis L. Petersen;Youdinghuan Chen

    (2020)
    96 Citations
  • Optimization and expansion of non-negative matrix factorization.

    Xihui Lin;Paul C. Boutros;Paul C. Boutros

    (2020)
    88 Citations
  • DrugShot: querying biomedical search terms to retrieve prioritized lists of small molecules

    (2022)
    81 Citations
  • MicrobeAnnotator: a user-friendly, comprehensive functional annotation pipeline for microbial genomes

    Carlos A. Ruiz-Perez;Roth E. Conrad;Konstantinos T. Konstantinidis

    (2021)
    81 Citations

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